Mia culpa!
Eric, multiple file loading was broken in 11.9.25. (That was that message I
sent earlier today.) If 11.9.26 isn't already released, it will be soon. In
the mean time you have to use
http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip
So, I'm sorry, but you'll have to run those tests on 11.9.26.
Bob
On Mon, Feb 8, 2010 at 9:21 AM, Eric Martz <martze...@yahoo.com> wrote:
> Dear Bob,
>
> I have done some tests of 11.9.25 with Proteopedia pages. Proteopedia can
> export any page to a downloaded file tree which can be displayed in a
> browser. This makes it easy to test different versions of Jmol offline.
>
> Several pages work fine in 11.9.25. However, some that contain animations
> of multiple-model PDB files do not make Jmol 11.9.25 happy, although they
> work fine in 11.8.9.
>
> One of the animation scripts in Proteopedia displays correctly in 11.8.9,
> but shows nothing in Jmol 11.9.25. The java console says notably
>
> CommandWatcher InterruptedException!
> org.jmol.viewer.scriptmanager$commandwatc...@cab5b6
>
> When I run this script in the Jmol application, it works fine in 11.8.9 but
> causes 11.9.25 to "vaporize" (instantly the windows vanish).
>
> I tried just loading the multi-model file and running the animation
> commands and everything worked fine, so something else in this script is
> indigestible, or some combination.
>
> The script in question is a state-script that has been modified somewhat to
> work in Protepedia.
>
> I have put a demo fileset at
> http://molvis.sdsc.edu/tmp/kills_11.9.25.zip
>
> DEMO TESTS:
>
> 1. Drag index.html and drop it into a browser. You'll see the above
> Exception message in the java console, and nothing in Jmol.
>
> 2. Start Jmol-11.8.9.jar (included) and run "script 1.spt". A nice
> animation appears.
>
> 3. Ditto for Jmol-11.9.25.jar (included), and it vaporizes.
>
> Please advise. Thanks, -Eric
>
>
>
>
>
>
>
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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