Thanks, Eric. Yes, the recent mega reorganization and speed up of script
processing introduced this bug. It's the "exit" command not properly
operating. That's fixed for 11.9.27. As I mentioned earlier, I need everyone
to check scripts -- this is just the sort of problem we are looking for.
Hopefully this will be the last of it. Uploading
http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip now.
Bob
On Tue, Feb 9, 2010 at 6:46 AM, Eric Martz <martze...@yahoo.com> wrote:
> Dear Bob,
>
> I am sorry to report that 11.9.26 also finds our script indigestible. The
> application still vaporizes, and the applet still remains blank. The only
> difference is that now the applet does not generate the Exception in the
> java console -- there are no error messages that I can discern. Again, the
> script works fine in 11.8.9.
>
> This example uses multiple models in one file, not multiple files. The demo
> with Jmol updated to 11.9.26 is here:
> molvis.sdsc.edu/tmp/kills_11.9.26.zip
>
> See DEMO TESTS below.
>
>
> --- On Mon, 2/8/10, Robert Hanson <hans...@stolaf.edu> wrote:
>
> > From: Robert Hanson <hans...@stolaf.edu>
> > Subject: Re: [Jmol-users] 11.9.25 deems script indigestible
> > To: jmol-users@lists.sourceforge.net
> > Date: Monday, February 8, 2010, 1:44 PM
> > Mia culpa!
> >
> > Eric, multiple file loading was broken in 11.9.25. (That
> > was that message I sent earlier today.) If 11.9.26 isn't
> > already released, it will be soon. In the mean time you have
> > to use http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip
> >
> >
> > So, I'm sorry, but you'll have to run those tests
> > on 11.9.26.
> >
> > Bob
> >
> >
> > On Mon, Feb 8, 2010 at 9:21 AM,
> > Eric Martz <martze...@yahoo.com>
> > wrote:
> >
> > Dear Bob,
> >
> >
> >
> > I have done some tests of 11.9.25 with Proteopedia pages.
> > Proteopedia can export any page to a downloaded file tree
> > which can be displayed in a browser. This makes it easy to
> > test different versions of Jmol offline.
> >
> >
> >
> > Several pages work fine in 11.9.25. However, some that
> > contain animations of multiple-model PDB files do not make
> > Jmol 11.9.25 happy, although they work fine in 11.8.9.
> >
> >
> >
> > One of the animation scripts in Proteopedia displays
> > correctly in 11.8.9, but shows nothing in Jmol 11.9.25. The
> > java console says notably
> >
> >
> >
> > CommandWatcher InterruptedException!
> > org.jmol.viewer.scriptmanager$commandwatc...@cab5b6
> >
> >
> >
> > When I run this script in the Jmol application, it works
> > fine in 11.8.9 but causes 11.9.25 to "vaporize"
> > (instantly the windows vanish).
> >
> >
> >
> > I tried just loading the multi-model file and running the
> > animation commands and everything worked fine, so something
> > else in this script is indigestible, or some combination.
> >
> >
> >
> > The script in question is a state-script that has been
> > modified somewhat to work in Protepedia.
> >
> >
> >
> > I have put a demo fileset at
> >
> > http://molvis.sdsc.edu/tmp/kills_11.9.25.zip
> >
> >
> >
> > DEMO TESTS:
> >
> > 1. Drag index.html and drop it into a browser. You'll
> > see the above Exception message in the java console, and
> > nothing in Jmol.
> >
> > 2. Start Jmol-11.8.9.jar (included) and run "script
> > 1.spt". A nice animation appears.
> >
> > 3. Ditto for Jmol-11.9.25.jar (included), and it
> > vaporizes.
> >
> > Please advise. Thanks, -Eric
>
>
>
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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