Dear Bob,
For the tests I've performed, 11.9.29_dev (obtained Feb 13, 2010 about 2 PM in
Israel so either 6 or 7 AM in Minnesota) seems to be working well. Just a few
bugs:
1. (This one has been around for a long time) Most reports in the output window
of the Jmol Console are duplicated, for example
"select all" produces
26,656 atoms selected
26,656 atoms selected
If you "set debugscript on" and run a script, every line is duplicated.
2. (This has also been true for some time) When you click the STATE button in
the Jmol Console, a new window opens (the Jmol Script Editor) displaying in
blue "current state". Where is the state script? Is this a bug or a feature?
If you "show script", you get the state script in the output box of the Jmol
Console.
With current Apple java 1.5.0_22, you can no longer block, drag and drop the
state script (and forever you can't copy and paste it). Yikes!
3. When I run certain state scripts on multiple-model PDB files, the resulting
display contains unwanted wireframe for parts of the molecule but not other
parts. The unwanted wireframe fragments do not appear when the same script is
run in 11.8.9 or 11.8.18.
In one case, little 2-atom segments of wireframe appear here and there when
only backbone should be showing. In another case, some fragments of DNA
wireframe, and wireframe for all the protein, appear when wireframe should be
complete for DNA and not present for protein. The fragments that appear
unwanted are different in each model.
If you need me to put these example scripts online with applet demos &
downloadable, just say the word.
-Eric
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