On Sat, Feb 13, 2010 at 9:11 AM, Eric Martz <[email protected]> wrote:
> Dear Bob,
>
> For the tests I've performed, 11.9.29_dev (obtained Feb 13, 2010 about 2 PM
> in Israel so either 6 or 7 AM in Minnesota) seems to be working well. Just a
> few bugs:
>
> 1. (This one has been around for a long time) Most reports in the output
> window of the Jmol Console are duplicated, for example
>
> "select all" produces
> 26,656 atoms selected
> 26,656 atoms selected
>
>
found it!
> If you "set debugscript on" and run a script, every line is duplicated.
>
> same problem, I think.
> 2. (This has also been true for some time) When you click the STATE button
> in the Jmol Console, a new window opens (the Jmol Script Editor) displaying
> in blue "current state". Where is the state script? Is this a bug or a
> feature?
>
simple bug -- fixed
>
> If you "show script", you get the state script in the output box of the
> Jmol Console.
>
> With current Apple java 1.5.0_22, you can no longer block, drag and drop
> the state script (and forever you can't copy and paste it). Yikes!
>
Be sure to report that -- a major Java bug.
>
> 3. When I run certain state scripts on multiple-model PDB files, the
> resulting display contains unwanted wireframe for parts of the molecule but
> not other parts. The unwanted wireframe fragments do not appear when the
> same script is run in 11.8.9 or 11.8.18.
>
> In one case, little 2-atom segments of wireframe appear here and there when
> only backbone should be showing. In another case, some fragments of DNA
> wireframe, and wireframe for all the protein, appear when wireframe should
> be complete for DNA and not present for protein. The fragments that appear
> unwanted are different in each model.
>
examples would be nice.
>
> If you need me to put these example scripts online with applet demos &
> downloadable, just say the word.
>
> -Eric
>
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>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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