Hello, Francois
> However I can´t find the way to get the data back from jmol as a
> molfile.
This was commented a couple of days ago. Only for MOL format, you can
use
getProperty extractModel (atom expression)
(see http://chemapps.stolaf.edu/jmol/docs/)
For any format, there's also
getProperty fileContents
> I found how to get the data that was set, but if it is
> rotated for example, the atom coordinates will have changed.
No. The coordinates do not change as a consequence of model rotation
and translation.
> I think it may be something like jmolGetPropertyAsString
There's probably also a way to do it with that, but the above two
ones are simpler.
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