Bob, I stand corrected. I do not lose rotation affects by using the extracted molfiles. So the only issue for our application is partial charges on files that contain this information.
Exchange of models originating from NIH are also a problem. Although the state file has the inline load data, I assume this problem is related to the fact that the NIH model url has only a temporary existence. I'm thinking extracted molfiles are my best bet at this point. Otis Otis Rothenberger chemagic.com On 9/25/2010 12:33 AM, Otis Rothenberger wrote: > Bob, > > I'm working on a multi-user Jmol applet for Skype - i.e. server driven > exchange during a Skype call. While I can send/receive model kit edited > models, I'm running into problems with bond order. Models edited by atom > replacement, breaking a bond, inverting a stereo center, and rotating a > bond exchange nicely. Bond order other than zero (break) presents a > problem. By way of example, if one user sends a model edited by a single > to double bond edit, the other user receives the correct stoichiometry > and sp2 geometry, but the sent double bond shows up as single in the > receiving browser. Bonds edited to triple are also a problem. > > I'm using Jmol save/restore state to make these transfers. While trying > to track down the multi-user problem, I discovered that the problem is > Jmol save/restore state. In other words, if I simply do a save/restore > state locally in one browser, the same problems occur. Is this a bug or > a misuse of Jmol state on my part? I'm pretty sure just using the > extracted molfile would work, but exchanging the entire state would be > better. I don't think the extracted molfile would send a model that was > simply bond axis rotated. With the state transfer, one user can send > another user a conformer rotation. > > This is all using 12.1.11_dev. > > Otis > ------------------------------------------------------------------------------ Start uncovering the many advantages of virtual appliances and start using them to simplify application deployment and accelerate your shift to cloud computing. http://p.sf.net/sfu/novell-sfdev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
