Parial bond connections should be all set. Jmol was misreading the following
(undocumented) block, which is specifically for saving and restoring the
state. It was ignoring the order, diameter, and energy columns (3-5)
On Sat, Sep 25, 2010 at 9:35 AM, Otis Rothenberger <[email protected]>wrote:
>
> data "connect_atoms"
> 0 1 3 0.3 0.0 triple;
> 6 5 1 0.3 0.0 single;
> 7 5 1 0.3 0.0 single;
> 8 5 1 0.3 0.0 single;
> 9 3 1 0.3 0.0 single;
> 10 3 1 0.3 0.0 single;
> 11 3 1 0.3 0.0 single;
> end "connect_atoms";
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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