Hi Andrea Since PQR format is so similar to PDB format, you must instruct Jmol to read it as such. That could be the reason for your problem (or maybe not, but it is worth a first try)
load "pqr::myfile.pqr" (I wrote pqr, but the file extension is irrelevant; it's the prefix before the :: that matters) Or add a header line -- see http://wiki.jmol.org/index.php/File_formats/Coordinates#PQR Also, column positions of the values may be critical. The attached file works, I changed several things and don't know which one is the key. Possible problems: - column alignment - big difference in radius makes some spheres invisible (I've cut them to 1/10) - big distance between spheres makes hard to see them all Hope you can sort it out
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File: AndreaMagro.pqr
Date: 21 Mar 2013, 20:56
Size: 365 bytes.
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AndreaMagro.pqr
Description: Binary data
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