Andrea, this script seems to do what you want:
n1 = {*}.atomno.min;
n2 = {*}.atomno.max;
for (i=n1; i<=n2; i++) {
m = "s" + i;
d = 2 * {atomno=i}.vanderwaals;
// print d;
draw id @m diameter @d {atomno=i};
}
spacefill off;
Tested with file:
REMARK 1 PQR
HETATM 1 X -403.3 -445.3 -72.6 0.00 20.9
HETATM 2 X 429.2 285.4 -132.2 0.00 11.6
HETATM 3 X -304.5 -270.2 351.6 0.00 49.0
HETATM 4 X 292.5 -208.9 -35.7 0.00 20.5
HETATM 5 X -175.3 4.3 -103.2 0.00 54.1
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