Yes, it is not the need for other than the ATOM line. I did a quick test (in an 
old Jmol version) 
and it reads as pdb but does not display anything, for whatever reason
Add e.g.
 spacefill 23%
and you see the atom

 
> I also tried that, but I'm not sure how to do it with Visual Basic. 
> Essentially I use only two files: Jmol.js and JmolApplet.jar, and then 
> the start-up htm.  With JSmol, there is apparently not a 1:1 
> replacement, but I would like to be able to make the transition. I tried 
> the instructions, but it did not work for me.

You can try the method  making a "fake" Jmol.js file by merging JSmol.min.js 
and Jmol2.js -- 
explained in the Wiki. With that, you need no more changes in the page source 
(but may only 
work using JmolApplet0.jar et al. rather than JmolApplet.jar)



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