Jennifer,
Your page
http://chemserv.centre.edu/muzyka/spectralzoo
is mostly functional for me (at least in Firefox Windows7).
1. JSpecViewer loads, and it loads spectra when I click on the buttons.
2. JSmol aldo loads, althoug it is hidden due to the css rule
#structure { display: none; }
3. The [Show Structure] button is not working because it sends data to a
structure.htm page that does not exist. I have made a local duplicate of your
page with the proper structure.htm file and it also works.
So I believe there is no problem due to upgrading your JSmol version, there
is no JmolScript problem, even Javascript problems.
You have most likely a mixed up collection of pieces of javascript code
inherited from previous page.
For example,
- you are calling jquery.js twice (at the top and the bottom of your page) --
in
fact, three times counting the copy included in JSmol.min.js
- you are calling a mixture of JSmol-related js files, which are not needed as
Otis pointed out
- you are missing or have the wrong path to structure.htm
This is my advice:
(head section) Leave just these:
<script type="text/javascript" src="jquery/jquery.js"></script>
<script type="text/javascript" src="JSmol.min.nojq.js"></script>
<script type="text/javascript" src="js/JSmolJSV.js"></script>
(bottom of body) Remove this line:
<script src="../../reactionzoo/fluid_files/jquery.js"></script>
Optionally:
You can probably remove the jmol_isReady part, and clean up your Info
definitions to these:
Info = {
width: 800,
height: 300,
color: "#FFFFFF",
serverURL: "http://chemapps.stolaf.edu/jmol/jsmol/php/jsmol.php";,
disableInitialConsole: true,
use: "HTML5"
}
var Info2 = {
width: 200,
height: 200,
serverURL: "http://chemapps.stolaf.edu/jmol/jsmol/jsmol.php";,
use: "HTML5",
j2sPath: "j2s"
}
Although not important for your setup, this is the correct function, just in
case:
function cloneJSmol(JSmolObject) {
var t = JSmolObject._jmolType; //temp
if ( /_Canvas2D/.test(t) ) { t = 'HTML5'; }
else if ( /_Canvas3D/.test(t) ) { t = 'WebGL'; }
else if ( /_Applet/.test(t) ) { t = 'Java'; }
else { t = null; }
JSmolCloneData.type = t;
JSmolCloneData.state = Jmol.getPropertyAsString(JSmolObject,
'stateInfo');
window.open('structure.htm','JSmolPopup','resizable, width=500,
height=500');
}
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