Dear All,
I'm having a few problems with exporting molecules as x3d files. PDB code
1EQZ doesn't seem to produce a proper x3d file.
After loading the 1EQZ.pdb file into JSmol I have run the following
commands:
hide all
display protein
cartoon only
set cartoonFancy true
color chain
write X3D 1EQZ.x3d
The x3d file is written but it contains no coordinates or anything. All I
get is shown below.
Any idea what is going wrong with 1EQZ?
Thanks
Chris
<!DOCTYPE X3D PUBLIC "ISO//Web3D//DTD X3D 3.1//EN" "
http://www.web3d.org/specifications/x3d-3.1.dtd";>
<X3D profile='Immersive' version='3.1' xmlns:xsd='
http://www.w3.org/2001/XMLSchema-instance' xsd:noNamespaceSchemaLocation='
http://www.web3d.org/specifications/x3d-3.1.xsd '>
<head>
<meta name='title' content="1EQZ"/>
<meta name='description' content='Jmol rendering'/>
<meta name='creator' content=' '/>
<meta name='created' content='Fri, 24 Jun 2016 20:31:42 +0100'/>
<meta name='generator' content='Jmol 14.6.0_2016.05.17 2016-05-18 01:07,
http://www.jmol.org'/>
<meta name='license' content='
http://www.gnu.org/licenses/licenses.html#LGPL'/>
</head>
<Scene>
<NavigationInfo type='EXAMINE'/>
<Background skyColor='0 0 0'/>
<Viewpoint fieldOfView='0.2837941' position='0 .0 510.043' orientation='0 0
1 -0.0'
jump='true' description='v1'/>
<!-- # Jmol perspective:
# screen width height dim: 1350 616 1350
# perspectiveDepth: true
# cameraDistance(angstroms): 510.0426
# aperatureAngle(degrees): 16.260204
# scalePixelsPerAngstrom: 9.250208
# light source: {-0.34815532, -0.34815532, 0.87038827}
# lighting: set ambientPercent 45; set diffusePercent 84; set
specular true; set specularPercent 22; set specularPower 40; set
specularExponent 6; set celShading false; set celShadingPower 10; set
zShadePower 3; set zDepth 0; set zSlab 50; set zShade false;
# center: {67.117004, 24.547, 135.8565}
# rotationRadius: 72.86323
# boundboxCenter: {67.117004, 24.547, 135.8565}
# translationOffset:
# zoom: 100.0
# moveto command: moveto 1.0 {0 0 1 0} 100.0 0.0 0.0 {67.117004 24.547
135.8565} 72.86323 {0 0 0} 0 0 0 3.0 0.0 0.0;
-->
<Transform translation='-67.117 -24.547 -135.857'>
</Transform>
</Scene>
</X3D>
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