Hi Chris All the ways you mention should be equivalent, since in the end they run the same command. >From your description, this is a bug in the newer version(s) of Jmol. For whatever reason it seems to appear only for certain models.
I cannot help with that, but Bob will surely track it down. In several tests I also obtained empty results but by random combinations I've had success a couple of times in producing x3d from this model. Curiously, on these successful occasions, after export the displayed model just shows one chain (that in reddish color, ie chain H) This might be related to the bug. Jmol application 14.6.0_2016.05.17 Also, note that while I did not apply cartoonfancy, the x3d product looks similar so maybe that setting is not needed for x3d export. Please see attached* state and x3d. The commands in this case were initialize load =1EQZ delete not protein cartoon only color chain then exported from popup menu (*) too big to attach here. You can get it from https://drive.google.com/open?id=0B-Kpcv-31q6gLU5JSVhfV05IMTg ------------------------------------------------------------------------------ Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San Francisco, CA to explore cutting-edge tech and listen to tech luminaries present their vision of the future. This family event has something for everyone, including kids. Get more information and register today. http://sdm.link/attshape _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users