Yes, JSP files should not be placed in the wwwroot directory of IIS. 
 JSP files should be maintained in web application directory structures 
under the <JRun Root DIR>\servers\default directory.  When a request for 
a regular HTML file is received IIS should handle it directly, serving 
the file up from the wwwroot directory structure.  When a request comes 
in for a JSP file, IIS will forward the request to JRun which will 
process the appropriate JSP file in its directory structure and respond 
accordingly.

Amit r wrote:

>i'm using JRUN 3.1 on windows NT and IIS 4.0
>steps i followed are as under
>
>first i installed jrun on my webserver(iis) and
>configured JRUN/IIS using Connector wizard. and it was
>done properly. (this step is given in setup.pdf page
>no 172 simple distributed installation)
>
>then i installed JRUn on another PC that is my app
>server (diff from iis) now i want to configure iis
>with this JRUn. so i go to JMC and run connector
>wizard. in JRUN server IP address field o connector
>wizard i put IP address of the machine on which JRUn
>is installed. and JMC gives me message that
>configuration is done successfully.
>now for testing purpose i'm stopping JRUN on IIS
>server and i'm accesing http://webserver and i get
>default.asp of iis. now i put a.jsp (simple JSP page)
>in wwwroot of iis nad now try to access it that time
>it gives me could not connect to JRUn server.
>
>please guide me where i'm going wrong..
>
>can anybody tell me wheather i have to keep all my
>jsps on JRUN server instead of IIS servers
>c:\inetpub\wwwroot directory
>
>help needed badly
>
>/amit
>
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