My version info is:

Julia Version 0.3.0-prerelease+1043

Commit ab37fde* (2014-01-17 10:38 UTC)

Platform Info:

  System: Darwin (x86_64-apple-darwin13.0.0)

  CPU: Intel(R) Core(TM) i7-3520M CPU @ 2.90GHz

  WORD_SIZE: 64

  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY)

  LAPACK: libopenblas

  LIBM: libopenlibm



On Saturday, January 18, 2014 3:46:55 AM UTC, Isaiah wrote:
>
> Strange. Well you could push manually and make a pull request against 
> METADATA. What version of Julia are you running? (`versioninfo()`)
>
> On Fri, Jan 17, 2014 at 10:33 PM, Ben Ward <[email protected]<javascript:>
> > wrote:
>
>> I've just removed my packages .julia folder and redid Pkg.init() so I 
>> should have new .julia/METADATA. I made a minor update to the read me of 
>> Phylogenetics.jl's read-me, and done Pkg.tag() to make the registered 
>> version 0.0.1 instead of 0.0.0 on account of some welcome changes and bug 
>> fixes by a contributor. Now Pkg.publish() says:
>>
>> *julia> **Pkg.publish()*
>>
>> *ERROR: METADATA is behind origin/metadata-v2 – run `Pkg.update()` before 
>> publishing*
>>
>> * in publish at pkg/entry.jl:306*
>>
>> * in anonymous at pkg/dir.jl:25*
>>
>> * in cd at file.jl:22*
>>
>> * in cd at pkg/dir.jl:25*
>>
>> * in publish at pkg.jl:57*
>>
>> The git log:
>>
>> cd .julia/METADATA
>> git log
>>
>> n95753:METADATA wardb$ git log
>>
>> commit eef97d0d9c0bacad25507b36624ad5b7652ef57a
>>
>> Author: ward9250 <[email protected]>
>>
>> Date:   Sat Jan 18 03:31:04 2014 +0000
>>
>>
>>
>>     Tag Phylogenetics v0.0.1
>>
>>
>>
>> commit bfae06320259898aa056026352905a126f63521d
>>
>> Author: Dahua Lin <[email protected]>
>>
>> Date:   Fri Jan 17 16:55:12 2014 -0600
>>
>>
>>
>>     Tag StatsBase v0.3.4
>>
>>
>>
>> commit c389e0e9e6cdf7f8004a958e04c36d10371c6df1
>>
>> Author: Steven G. Johnson <[email protected]>
>>
>> Date:   Fri Jan 17 15:58:16 2014 -0500
>>
>>
>>
>>     Tag PyCall v0.4.0
>>
>>
>>
>> commit f1aed389a89712589e3c2141c6f2988b17e9b4d9
>>
>> Merge: bbb9754 8418f37
>>
>> Author: Stefan Karpinski <[email protected]>
>>
>> Date:   Fri Jan 17 10:00:42 2014 -0800
>>
>>
>>
>>     Merge pull request #517 from jverzani/pull-request/8418f379
>>
>>     
>>
>> commit bfae06320259898aa056026352905a126f63521d
>>
>> Author: Dahua Lin <[email protected]>
>>
>> Date:   Fri Jan 17 16:55:12 2014 -0600
>>
>>
>>
>>     Tag StatsBase v0.3.4
>>
>>
>>
>> commit c389e0e9e6cdf7f8004a958e04c36d10371c6df1
>>
>> Author: Steven G. Johnson <[email protected]>
>>
>> Date:   Fri Jan 17 15:58:16 2014 -0500
>>
>>
>>
>> commit eef97d0d9c0bacad25507b36624ad5b7652ef57a
>>
>> Author: ward9250 <[email protected]>
>>
>> Date:   Sat Jan 18 03:31:04 2014 +0000
>>
>>
>>
>>     Tag Phylogenetics v0.0.1
>>
>>
>>
>> commit bfae06320259898aa056026352905a126f63521d
>>
>> Author: Dahua Lin <[email protected]>
>>
>> Date:   Fri Jan 17 16:55:12 2014 -0600
>>
>>
>>
>>     Tag StatsBase v0.3.4
>>
>>
>>
>> commit c389e0e9e6cdf7f8004a958e04c36d10371c6df1
>>
>> Author: Steven G. Johnson <[email protected]>
>>
>> Date:   Fri Jan 17 15:58:16 2014 -0500
>>
>>
>>
>>     Tag PyCall v0.4.0
>>
>>
>>
>> commit f1aed389a89712589e3c2141c6f2988b17e9b4d9
>>
>> Merge: bbb9754 8418f37
>>
>> Author: Stefan Karpinski <[email protected]>
>>
>> Date:   Fri Jan 17 10:00:42 2014 -0800
>>
>>
>>
>> :
>>
>>
>>
>> On Friday, January 17, 2014 10:06:12 PM UTC, Ben Ward wrote:
>>
>>> Hi, 
>>>
>>> I've been working on an R project as part of a PhD project for a long 
>>> time and so have only recently returned to take a look at the 
>>> Phylogenetics.jl package I started to create a while ago. Reading the 
>>> documentation on packages I see what look to me like changes, like 
>>> publishing checking out branches and such all from within Julia, this is 
>>> somewhat different to the set up I have: I had a repository on github and 
>>> on my macbook in a folder on my desktop, and this was the actual repo and 
>>> when I used julia and tested the package this folder was ln -s into the 
>>> .julia folder, and my METADATA was similarly linked into .julia. I then 
>>> made commits to these with the github gui for osx and just pushed changes 
>>> and switched branches as I needed. Is this kind of arrangement still 
>>> acceptable or is there a better way of updating your package and working 
>>> with updating METADATA now? Just think maybe I need to change my setup to 
>>> avoid problems.
>>>
>>> Thanks,
>>> Ben.  
>>>
>>
>

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