I'm running Julia v0.4.5 on the server (via SSH).
julia> versioninfo()
Julia Version 0.4.5
Commit 2ac304d (2016-03-18 00:58 UTC)
Platform Info:
System: Linux (x86_64-unknown-linux-gnu)
CPU: Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz
WORD_SIZE: 64
BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Sandybridge)
LAPACK: libopenblas64_
LIBM: libopenlibm
LLVM: libLLVM-3.3
I've changed the the JULIA_PKGDIR parameter from initial
julia> ENV["JULIA_PKGDIR"]
"/cluster/software/VERSIONS/julia/0.4.5/share/julia/site/"
to following via .juliarc.jl
julia> ENV["JULIA_PKGDIR"]
"/usit/abel/u1/tomasmi/nobackup/.julia/"
to be able to install the packages to directory I can fully access.
Adding package works flawlessly (starting with clean plate):
julia> Pkg.init()
INFO: Initializing package repository /usit/abel/u1/tomasmi/nobackup/.julia/
v0.4
INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl
julia> Pkg.add("DataFrames")
INFO: Cloning cache of ArrayViews from
git://github.com/JuliaLang/ArrayViews.jl.git
INFO: Cloning cache of Compat from git://github.com/JuliaLang/Compat.jl.git
INFO: Cloning cache of DataArrays from
git://github.com/JuliaStats/DataArrays.jl.git
INFO: Cloning cache of DataFrames from
git://github.com/JuliaStats/DataFrames.jl.git
INFO: Cloning cache of Docile from
git://github.com/MichaelHatherly/Docile.jl.git
INFO: Cloning cache of GZip from git://github.com/JuliaLang/GZip.jl.git
INFO: Cloning cache of Reexport from
git://github.com/simonster/Reexport.jl.git
INFO: Cloning cache of SortingAlgorithms from
git://github.com/JuliaLang/SortingAlgorithms.jl.git
INFO: Cloning cache of StatsBase from
git://github.com/JuliaStats/StatsBase.jl.git
INFO: Cloning cache of StatsFuns from
git://github.com/JuliaStats/StatsFuns.jl.git
INFO: Installing ArrayViews v0.6.4
INFO: Installing Compat v0.7.20
INFO: Installing DataArrays v0.3.3
INFO: Installing DataFrames v0.7.3
INFO: Installing Docile v0.5.23
INFO: Installing GZip v0.2.19
INFO: Installing Reexport v0.0.3
INFO: Installing SortingAlgorithms v0.0.6
INFO: Installing StatsBase v0.8.2
INFO: Installing StatsFuns v0.2.2
INFO: Package database updated
Nevertheless I hit the wall the moment I want to use the package:
julia> using DataFrames
INFO: Precompiling module DataFrames...
INFO: Recompiling stale cache file /cluster/software/VERSIONS/julia/0.4.5/
share/julia/site/lib/v0.4/Compat.ji for module Compat.
ERROR: LoadError: unlink: permission denied (EACCES)
in unlink at fs.jl:102
in rm at file.jl:59
in create_expr_cache at loading.jl:346
in compilecache at loading.jl:399
in recompile_stale at loading.jl:476
in _require_from_serialized at loading.jl:83
in _require_from_serialized at ./loading.jl:109
in require at ./loading.jl:235
in include at ./boot.jl:261
in include_from_node1 at ./loading.jl:320
[inlined code] from none:2
in anonymous at no file:0
in process_options at ./client.jl:257
in _start at ./client.jl:378
while loading /usit/abel/u1/tomasmi/nobackup/.julia/v0.4/DataFrames/src/
DataFrames.jl, in expression starting on line 11
ERROR: Failed to precompile DataFrames to /cluster/software/VERSIONS/julia/
0.4.5/share/julia/site/lib/v0.4/DataFrames.ji
in error at ./error.jl:21
in compilecache at loading.jl:400
in require at ./loading.jl:266
Recompilation tries to reach server side installed package even though I
have it in my JULIA_PKGDIR.
What did I miss or what do I have to change in ENV to get this work?
Thanks!
