Thank you Tony. Indeed this was a missing thing!
On Saturday, June 18, 2016 at 4:10:19 AM UTC+2, Tony Kelman wrote:
>
> Might also need to modify Base.LOAD_CACHE_PATH ?
>
>
> On Thursday, June 16, 2016 at 5:30:32 AM UTC-7, Tomas Mikoviny wrote:
>>
>> I'm running Julia v0.4.5 on the server (via SSH).
>>
>> julia> versioninfo()
>> Julia Version 0.4.5
>> Commit 2ac304d (2016-03-18 00:58 UTC)
>> Platform Info:
>> System: Linux (x86_64-unknown-linux-gnu)
>> CPU: Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz
>> WORD_SIZE: 64
>> BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Sandybridge)
>> LAPACK: libopenblas64_
>> LIBM: libopenlibm
>> LLVM: libLLVM-3.3
>>
>> I've changed the the JULIA_PKGDIR parameter from initial
>>
>> julia> ENV["JULIA_PKGDIR"]
>> "/cluster/software/VERSIONS/julia/0.4.5/share/julia/site/"
>>
>> to following via .juliarc.jl
>>
>> julia> ENV["JULIA_PKGDIR"]
>> "/usit/abel/u1/tomasmi/nobackup/.julia/"
>>
>> to be able to install the packages to directory I can fully access.
>> Adding package works flawlessly (starting with clean plate):
>>
>> julia> Pkg.init()
>> INFO: Initializing package repository /usit/abel/u1/tomasmi/nobackup/.
>> julia/v0.4
>> INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl
>>
>> julia> Pkg.add("DataFrames")
>> INFO: Cloning cache of ArrayViews from git://
>> github.com/JuliaLang/ArrayViews.jl.git
>> INFO: Cloning cache of Compat from git://
>> github.com/JuliaLang/Compat.jl.git
>> INFO: Cloning cache of DataArrays from git://
>> github.com/JuliaStats/DataArrays.jl.git
>> INFO: Cloning cache of DataFrames from git://
>> github.com/JuliaStats/DataFrames.jl.git
>> INFO: Cloning cache of Docile from git://
>> github.com/MichaelHatherly/Docile.jl.git
>> INFO: Cloning cache of GZip from git://github.com/JuliaLang/GZip.jl.git
>> INFO: Cloning cache of Reexport from git://
>> github.com/simonster/Reexport.jl.git
>> INFO: Cloning cache of SortingAlgorithms from git://
>> github.com/JuliaLang/SortingAlgorithms.jl.git
>> INFO: Cloning cache of StatsBase from git://
>> github.com/JuliaStats/StatsBase.jl.git
>> INFO: Cloning cache of StatsFuns from git://
>> github.com/JuliaStats/StatsFuns.jl.git
>> INFO: Installing ArrayViews v0.6.4
>> INFO: Installing Compat v0.7.20
>> INFO: Installing DataArrays v0.3.3
>> INFO: Installing DataFrames v0.7.3
>> INFO: Installing Docile v0.5.23
>> INFO: Installing GZip v0.2.19
>> INFO: Installing Reexport v0.0.3
>> INFO: Installing SortingAlgorithms v0.0.6
>> INFO: Installing StatsBase v0.8.2
>> INFO: Installing StatsFuns v0.2.2
>> INFO: Package database updated
>>
>> Nevertheless I hit the wall the moment I want to use the package:
>>
>> julia> using DataFrames
>> INFO: Precompiling module DataFrames...
>> INFO: Recompiling stale cache file /cluster/software/VERSIONS/julia/0.4.5
>> /share/julia/site/lib/v0.4/Compat.ji for module Compat.
>> ERROR: LoadError: unlink: permission denied (EACCES)
>> in unlink at fs.jl:102
>> in rm at file.jl:59
>> in create_expr_cache at loading.jl:346
>> in compilecache at loading.jl:399
>> in recompile_stale at loading.jl:476
>> in _require_from_serialized at loading.jl:83
>> in _require_from_serialized at ./loading.jl:109
>> in require at ./loading.jl:235
>> in include at ./boot.jl:261
>> in include_from_node1 at ./loading.jl:320
>> [inlined code] from none:2
>> in anonymous at no file:0
>> in process_options at ./client.jl:257
>> in _start at ./client.jl:378
>> while loading /usit/abel/u1/tomasmi/nobackup/.julia/v0.4/DataFrames/src/
>> DataFrames.jl, in expression starting on line 11
>> ERROR: Failed to precompile DataFrames to /cluster/software/VERSIONS/
>> julia/0.4.5/share/julia/site/lib/v0.4/DataFrames.ji
>> in error at ./error.jl:21
>> in compilecache at loading.jl:400
>> in require at ./loading.jl:266
>>
>> Recompilation tries to reach server side installed package even though I
>> have it in my JULIA_PKGDIR.
>> What did I miss or what do I have to change in ENV to get this work?
>>
>> Thanks!
>>
>
