Nice! conda install -c genepattern genepattern-notebook only works for osx-64
I am not sure what would be needed to make it work for linux... On Monday, August 15, 2016 at 4:43:57 PM UTC-7, Thorin Tabor wrote: > > We are pleased to announce the release of GenePattern Notebook, an > extension for Jupyter which provides access to hundreds of different > bioinformatic analyses through the GenePattern web service. > > http://genepattern.org/genepattern-notebooks > https://github.com/genepattern/genepattern-notebook > > Supported analyses include machine learning algorithms (clustering, > classification, dimension reduction), tools for working with gene > expression data (both RNA-seq and microarray), sequence variation and copy > number analysis, proteomics, flow cytometry and network analysis. > > Included in the extension are visual widgets for running analyses, tools > for sending results to downstream steps in a bioinformatic workflow, > Jupyter magics for creating GenePattern widgets and a Python library for > programmatically working with your results. > > To get started after installing the extension, just open a notebook and > change a cell to the new GenePattern cell type. A full walk-through of > using the extension is available on our website: > > http://genepattern.org/using-the-genepattern-notebook-environment > > An early version of the GenePattern Notebook Repository, a service > providing access to GenePattern Notebook functionality as well as a variety > of example notebooks, is available at the address below. > > https://notebook.genepattern.org > > The GenePattern Notebook extension can also be easily installed from pip > or conda: > > pip install genepattern-notebook > > or > > conda install -c genepattern genepattern-notebook > > Once installed, you will need to install and enable the accompanying > server and nbextensions. The ipywidgets nbextension must also be enabled: > > jupyter nbextension enable --py widgetsnbextension > jupyter nbextension install --py genepattern > jupyter nbextension enable --py genepattern > jupyter serverextension enable --py genepattern > > The GenePattern Notebook extension supports both Python 3.3+ and Python > 2.7. > > Cheers! > The GenePattern Team > -- You received this message because you are subscribed to the Google Groups "Project Jupyter" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/jupyter/65d8342b-6aaf-4a57-a332-f96fb3cf1daf%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
