That was an oversight. I'll get it deployed to conda for linux ASAP. Thorin Tabor GenePattern Team
On Sunday, August 21, 2016 at 11:06:27 PM UTC-7, Alain Domissy wrote: > > Nice! > > conda install -c genepattern genepattern-notebook only works for osx-64 > > I am not sure what would be needed to make it work for linux... > > > > On Monday, August 15, 2016 at 4:43:57 PM UTC-7, Thorin Tabor wrote: >> >> We are pleased to announce the release of GenePattern Notebook, an >> extension for Jupyter which provides access to hundreds of different >> bioinformatic analyses through the GenePattern web service. >> >> http://genepattern.org/genepattern-notebooks >> https://github.com/genepattern/genepattern-notebook >> >> Supported analyses include machine learning algorithms (clustering, >> classification, dimension reduction), tools for working with gene >> expression data (both RNA-seq and microarray), sequence variation and copy >> number analysis, proteomics, flow cytometry and network analysis. >> >> Included in the extension are visual widgets for running analyses, tools >> for sending results to downstream steps in a bioinformatic workflow, >> Jupyter magics for creating GenePattern widgets and a Python library for >> programmatically working with your results. >> >> To get started after installing the extension, just open a notebook and >> change a cell to the new GenePattern cell type. A full walk-through of >> using the extension is available on our website: >> >> http://genepattern.org/using-the-genepattern-notebook-environment >> >> An early version of the GenePattern Notebook Repository, a service >> providing access to GenePattern Notebook functionality as well as a variety >> of example notebooks, is available at the address below. >> >> https://notebook.genepattern.org >> >> The GenePattern Notebook extension can also be easily installed from pip >> or conda: >> >> pip install genepattern-notebook >> >> or >> >> conda install -c genepattern genepattern-notebook >> >> Once installed, you will need to install and enable the accompanying >> server and nbextensions. The ipywidgets nbextension must also be enabled: >> >> jupyter nbextension enable --py widgetsnbextension >> jupyter nbextension install --py genepattern >> jupyter nbextension enable --py genepattern >> jupyter serverextension enable --py genepattern >> >> The GenePattern Notebook extension supports both Python 3.3+ and Python >> 2.7. >> >> Cheers! >> The GenePattern Team >> > -- You received this message because you are subscribed to the Google Groups "Project Jupyter" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/jupyter/a0865fb8-c72c-4f5d-ad6d-d2a0f270dcf4%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
