This looks very cool, Thorin. Do you have the ability to deploy for win-64 as well?
Thanks. -brad On Monday, August 22, 2016 at 12:44:57 AM UTC-6, Thorin Tabor wrote: > > That was an oversight. I'll get it deployed to conda for linux ASAP. > > Thorin Tabor > GenePattern Team > > On Sunday, August 21, 2016 at 11:06:27 PM UTC-7, Alain Domissy wrote: >> >> Nice! >> >> conda install -c genepattern genepattern-notebook only works for osx-64 >> >> I am not sure what would be needed to make it work for linux... >> >> >> >> On Monday, August 15, 2016 at 4:43:57 PM UTC-7, Thorin Tabor wrote: >>> >>> We are pleased to announce the release of GenePattern Notebook, an >>> extension for Jupyter which provides access to hundreds of different >>> bioinformatic analyses through the GenePattern web service. >>> >>> http://genepattern.org/genepattern-notebooks >>> https://github.com/genepattern/genepattern-notebook >>> >>> Supported analyses include machine learning algorithms (clustering, >>> classification, dimension reduction), tools for working with gene >>> expression data (both RNA-seq and microarray), sequence variation and copy >>> number analysis, proteomics, flow cytometry and network analysis. >>> >>> Included in the extension are visual widgets for running analyses, tools >>> for sending results to downstream steps in a bioinformatic workflow, >>> Jupyter magics for creating GenePattern widgets and a Python library for >>> programmatically working with your results. >>> >>> To get started after installing the extension, just open a notebook and >>> change a cell to the new GenePattern cell type. A full walk-through of >>> using the extension is available on our website: >>> >>> http://genepattern.org/using-the-genepattern-notebook-environment >>> >>> An early version of the GenePattern Notebook Repository, a service >>> providing access to GenePattern Notebook functionality as well as a variety >>> of example notebooks, is available at the address below. >>> >>> https://notebook.genepattern.org >>> >>> The GenePattern Notebook extension can also be easily installed from pip >>> or conda: >>> >>> pip install genepattern-notebook >>> >>> or >>> >>> conda install -c genepattern genepattern-notebook >>> >>> Once installed, you will need to install and enable the accompanying >>> server and nbextensions. The ipywidgets nbextension must also be enabled: >>> >>> jupyter nbextension enable --py widgetsnbextension >>> jupyter nbextension install --py genepattern >>> jupyter nbextension enable --py genepattern >>> jupyter serverextension enable --py genepattern >>> >>> The GenePattern Notebook extension supports both Python 3.3+ and Python >>> 2.7. >>> >>> Cheers! >>> The GenePattern Team >>> >> -- You received this message because you are subscribed to the Google Groups "Project Jupyter" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/jupyter/ecf879f9-da16-4507-8b2a-b59996ad1123%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
