I don't think there is anything to be gained using  2 controllers, 
especially considering that each needs a minimum amount to get efficient. 
My controller at 50A is too big, (and not as efficient as it might be) but 
the 25A size was too small.
It is best for battery life to leave the 2 banks connected together, 
forever.  A battery monitor, like a Xantrex XBM that counts amp hours down 
and up is an essential item on a cruising boat.  Use that to monitor charge 
state of the entire battery set.  I see solar companies selling an amp and 
voltmeter as a battery monitor, but that is NOT the same.
Next best tool for a tinkerer is a hand held clamp on DC ammeter.
Lee

>>
> That's good info.  I'll have to arrange it so I can quickly reconfigure
> from series to parallel and do some testing of my own.  I may break down
> and buy two controllers, putting one on each battery bank.  The panels
> are mounted on both sides of the boat, aft.  The mizzen and main can
> block if they're up.  Even the mizzen mast will block once in a while.
>
> Thanks,
> Jim.

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