Paul Smith wrote:

>> So? Something else is going wrong. Silently. Could you post the
>> file, or rather a stripped down version demonstrating the problem?
> 
> %% LyX 1.3 created this file.  For more info, see

[... snip ...]
Ok, I have no problem with this. Please:
* convert it back to lyx using relyx.
* Run it through lyx2lyx.
Post both the relyx-ed file and the lyx2lyx file.

FYI I show the relyxed lxy file below and the change made when running 
it through lyx2lyx

> I cannot determine them, as they were installed together with
> Ruurd's LyX. invisibly.

In that case please tell Ruurd that he should bundle the getopt module 
into his stripped down version.

For the version type "python -V" from the command line.

Angus

Running your latex file through reLyX gives:

# The reLyX bundled with LyX 1.3 created this file.
# For more info see http://www.lyx.org/
\lyxformat 2.15
\textclass article
\language english
\inputencoding latin1
\use_natbib 0
\use_numerical_citations 0

\layout Standard

This is a line!
\the_end

Running this through lyx2lyx produces these changes:
-# The reLyX bundled with LyX 1.3 created this file.
-# For more info see http://www.lyx.org/
-\lyxformat 2.15
+#LyX 1.3 created this file. For more info see http://www.lyx.org/
+\lyxformat 221
 \textclass article
 \language english
 \inputencoding latin1



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