Why are you "syncing tens of thousands of messages to an IMAP server?"  Did you 
backfeed all your local mail archives back out to the server?

Mail's IMAP defaults are tuned to pure cloud-based operation, which frankly 
most people do not need.  Sure, being able to access any piece of mail or any 
draft created on any device from every other device you own is a "cool 
feature," but most people are never going to need it or use it, and the 
overhead is massive.  Turn off "keep sent mail / drafts / trash on the server" 
and your overhead goes down considerably.   Same goes for keeping named 
archival mailboxes on your server.

I see you are a gmail user — perhaps you are suffering the technical 
consequences (never mind the privacy consequences) of gmail's default "keep 
every piece of mail that ever crosses our threshold forever" design.  If you 
dig down into the POP/IMAP configuration page at the website, you can turn off 
that behavior and then manually trim your "permanent record" at gmail back down 
to a reasonable level by pruning your "all" mailbox.

> On Jan 19, 2016, at 11:23 PM, Matt Penna <[email protected]> wrote:
> 
> For what it’s worth, I finally switched to IMAP after nearly 20 years of 
> using POP and the experience has not been good. Mail.app seems ill-quipped to 
> handle large amounts of mail and performs very poorly when it has to sync 
> tens of thousands of messages to an IMAP server across many folders.
> 
> Yes, I realize this is not a typical use case and my IMAP experience may have 
> been better if I were using a better client, but Mail.app is not impressing 
> me these days. It is almost impossible to find robust mail clients since the 
> demise of Eudora (which, while handling large amounts of mail with aplomb, 
> was abominable in a number of other ways).
> 
> If you have a lot of mail, tread carefully with IMAP and Mail.app, especially 
> on 10.11.
> 
>       Matt
> 
> 
>> On Jan 19, 2016, at 8:08 AM, Macs R We <[email protected]> wrote:
>> 
>> I'm reticent to make any such suggestions at all, since doing this using 
>> IMAP is WAY simpler than doing it using POP with a Rube Goldberg back-end.  
>> You're essentially spending much time and energy — and playing with what are 
>> essentially internal interfaces that Apple can change on a whim* — to 
>> replicate IMAP without actually using IMAP.  You could get an IMAP 
>> connection working with a fraction of this effort, and never have to worry 
>> about it again.
>> 
>>> On Jan 19, 2016, at 5:57 AM, Chris <[email protected]> wrote:
>>> 
>>> Hi all:
>>> 
>>> I habitually use POP3 mail on both my Desktop and Laptop with the latter 
>>> set to leave files on server.  By simply transferring the ~/library/mail 
>>> folder between the two machines using Chronosync I kept both up to date.
>>> 
>>> With the latest iteration of Mail and El Cap 11.2 this doesn't seem to work 
>>> as Mail.app has spread various components around: EG there's some stuff in 
>>> /private/var/folders/FEEEE-DDDD..., others in ~/library/application 
>>> support.   Very Windows……
>> 
>> *:
>>> Can someone tell me which of these are essential to be synchronised?  
>> 
>> 
>>> I don't really want to set all accounts to IMAP unless I really really have 
>>> to, since the last time I tried it I took a whole day to sort out the 
>>> resultant mess. 
>>> 
>>> Any suggestions for an easy method of synching mail between the two 
>>> machines would be welcome.  I did wonder if putting the primary mail folder 
>>> ({whichever that is) in DropBox and using a symlink would be a viable, if 
>>> kludgy, option.
>>> 
>>> Cheers,
>>> 
>>> Chris
>>> 
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>> 
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