Hi Syed,
Indeed, with the dbSNP query it is impossible to proceed.
But I have created a local biomart with data of my own. My problem
refers to this biomart; I was referring to dbSNP as an illustration.
Thank you for your assistance.
Alexandre
Syed Haider wrote:
Hi Alexandre
Are you using Martview ?. If thats the case, how do you proceed to
output page, with the said filter = 0. In this case as there are no
possible rows, you cannot proceed to result page. ?
Syed
On Tue, 2006-07-18 at 15:43 +0100, Syed Haider wrote:
Hi Alexandre,
I have a look at the issue, and will let you know as soon as possible.
Cheers
Syed
On Tue, 2006-07-18 at 15:04 +0200, Alexandre Gattiker wrote:
Hi Arek,
Thank you very much for the really quick fix.
Now the count is reported correctly in the HTML page. However, when I
eventually export the data to a table, the table again contains all the
rows as if the filter has been ignored.
Best
Alexandre
Arek Kasprzyk wrote:
On 14 Jul 2006, at 15:55, Alexandre Gattiker wrote:
Hello,
I'm creating a biomart and have trouble with searching numeric fields
with the value 0.
This can be reproduced by searching for human SNPs at:
http://www.ensembl.org/Multi/martview
and specifying a value for Minor allele frequencies -> Maximum
frequency of the minor allele.
If I enter "1", I get:
filter
Maximum frequency of the minor allele: 1
2823020 Entries pass Filters
but if I enter "0", I get:
filter
None
12065231 Entries pass Filters
Hi Alexandre,
this is now hopefully fixed. If you have a local install
please do 'cvs update' to get this patch. The central
server (http://www.biomart.org/biomart/martview)
has already been updated so you can test it there. We have
notified Ensembl folks and Ensmebl BioMart site will
follow with this patch in a few days
please let us know if you experience any further problems,
a.
Thank you in advance for your help.
Alexandre
-- Alexandre Gattiker
Swiss Institute of Bioinformatics, Genome Bioinformatics Group
Biozentrum Tel. +41 61 267 1579
Klingelbergstrasse 50 Fax +41 61 267 1585
4056 Basel [EMAIL PROTECTED]
Switzerland http://www.biozentrum.unibas.ch/primig
-------------------------------------------------------------------------------
Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
-------------------------------------------------------------------------------
--
Alexandre Gattiker
Swiss Institute of Bioinformatics, Genome Bioinformatics Group
Biozentrum Tel. +41 61 267 1579
Klingelbergstrasse 50 Fax +41 61 267 1585
4056 Basel [EMAIL PROTECTED]
Switzerland http://www.biozentrum.unibas.ch/primig
