Hi, I thought it might be a bug!
If it helps, here's a few more rat genes that I've noticed have the same problem: ENSRNOG00000000065 ENSRNOG00000000507 ENSRNOG00000005947 ENSRNOG00000006108 ENSRNOG00000016593 ENSRNOG00000036842 Is there anything that I can do to help you diagnose/ fix the problem? I do have some coding experience. Thanks for the response! Charles On 1/2/07, Arek Kasprzyk <[EMAIL PROTECTED]> wrote:
On 2 Jan 2007, at 17:30, Charles Danko wrote: > Hi, > > I've noticed that certain genes are missing from BioMart Results when > using the web interface. > > To replicate the problem: > Select Dataset ENSEMBL 42 GENE (SANGER) > Specis: Rattus norvegicus genes (RGSC3.4) > > Under attributes select Sequences. > Sequences, select: Flank-coding region (Transcript) or Peptide or > Coding Sequence > Upstream flank: 2000 (selected) > > Gene Attributes: ENSEMBL Gene ID > > Filters: > Select ID list limit, paste in Gene ID: ENSRNOG00000000065 > > Select Count: shows 1 / 27,249 Genes > > Select Results ... blank, no results!!!!!! > > Searching for ENSRNOG00000000065 under ENSEMBL gives a gene with 1 > transcript that should come up under biomart?! > > Other genes work just fine (e.g. ENSRNOG00000005947). Other genes > work only when selecting either Flank-coding region (Transcript) or > Peptide or Coding Sequence but not all 3. > Hi Charles, > What am I doing wrong? nothing :-) but thanks for helping us to find a bug that has proved to be very elusive. The gene is actually present if you select any other (apart from sequence) attributes but somehow when you select sequence it does not come up. Please bare with us while we are investigating further to get to the bottom of it. We'll get back to you when it is fixed a. > > Thanks very much! > Charles Danko > ------------------------------------------------------------------------ ------- Arek Kasprzyk EMBL-European Bioinformatics Institute. Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. Tel: +44-(0)1223-494606 Fax: +44-(0)1223-494468 ------------------------------------------------------------------------ -------
