Hi! Everything seems to work great! Thanks very much for such a quick fix!
Best, Charles On 1/10/07, Arek Kasprzyk <[EMAIL PROTECTED]> wrote:
On 2 Jan 2007, at 18:43, Charles Danko wrote: > Hi, > > I thought it might be a bug! > > If it helps, here's a few more rat genes that I've noticed have the > same problem: > > ENSRNOG00000000065 > ENSRNOG00000000507 > ENSRNOG00000005947 > ENSRNOG00000006108 > ENSRNOG00000016593 > ENSRNOG00000036842 > > Is there anything that I can do to help you diagnose/ fix the problem? > I do have some coding experience. > > Thanks for the response! > Charles > Hi Charles, Now should work file upload as well a. > > On 1/2/07, Arek Kasprzyk <[EMAIL PROTECTED]> wrote: >> >> On 2 Jan 2007, at 17:30, Charles Danko wrote: >> >> > Hi, >> > >> > I've noticed that certain genes are missing from BioMart Results >> when >> > using the web interface. >> > >> > To replicate the problem: >> > Select Dataset ENSEMBL 42 GENE (SANGER) >> > Specis: Rattus norvegicus genes (RGSC3.4) >> > >> > Under attributes select Sequences. >> > Sequences, select: Flank-coding region (Transcript) or Peptide or >> > Coding Sequence >> > Upstream flank: 2000 (selected) >> > >> > Gene Attributes: ENSEMBL Gene ID >> > >> > Filters: >> > Select ID list limit, paste in Gene ID: ENSRNOG00000000065 >> > >> > Select Count: shows 1 / 27,249 Genes >> > >> > Select Results ... blank, no results!!!!!! >> > >> > Searching for ENSRNOG00000000065 under ENSEMBL gives a gene with 1 >> > transcript that should come up under biomart?! >> > >> > Other genes work just fine (e.g. ENSRNOG00000005947). Other genes >> > work only when selecting either Flank-coding region (Transcript) or >> > Peptide or Coding Sequence but not all 3. >> > >> >> Hi Charles, >> >> > What am I doing wrong? >> >> nothing :-) but thanks for helping us to find a bug that has proved to >> be very elusive. >> The gene is actually present if you select any other (apart from >> sequence) attributes >> but somehow when you select sequence it does not come up. >> >> Please bare with us while we are investigating further to get to the >> bottom of it. >> We'll get back to you when it is fixed >> a. >> >> >> >> > >> > Thanks very much! >> > Charles Danko >> > >> >> >> ---------------------------------------------------------------------- >> -- >> ------- >> Arek Kasprzyk >> EMBL-European Bioinformatics Institute. >> Wellcome Trust Genome Campus, Hinxton, >> Cambridge CB10 1SD, UK. >> Tel: +44-(0)1223-494606 >> Fax: +44-(0)1223-494468 >> ---------------------------------------------------------------------- >> -- >> ------- >> >> >> >> >> ------------------------------------------------------------------------ ------- Arek Kasprzyk EMBL-European Bioinformatics Institute. Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. Tel: +44-(0)1223-494606 Fax: +44-(0)1223-494468 ------------------------------------------------------------------------ -------
