On 2 Jan 2007, at 18:43, Charles Danko wrote:
Hi,
I thought it might be a bug!
If it helps, here's a few more rat genes that I've noticed have the
same problem:
ENSRNOG00000000065
ENSRNOG00000000507
ENSRNOG00000005947
ENSRNOG00000006108
ENSRNOG00000016593
ENSRNOG00000036842
Is there anything that I can do to help you diagnose/ fix the problem?
I do have some coding experience.
Hi Charles,
thanks for the offer but everything seems to be working correctly now
thanks to Damian's efforts. Please check it yourself and let us know
if you experience any more problems
a.
PS. We are still fixing the file upload problem, so the current fix
sorts out 'copy and paste' option. We'll update you when the file
upload is fixed as well
Thanks for the response!
Charles
On 1/2/07, Arek Kasprzyk <[EMAIL PROTECTED]> wrote:
On 2 Jan 2007, at 17:30, Charles Danko wrote:
> Hi,
>
> I've noticed that certain genes are missing from BioMart Results
when
> using the web interface.
>
> To replicate the problem:
> Select Dataset ENSEMBL 42 GENE (SANGER)
> Specis: Rattus norvegicus genes (RGSC3.4)
>
> Under attributes select Sequences.
> Sequences, select: Flank-coding region (Transcript) or Peptide or
> Coding Sequence
> Upstream flank: 2000 (selected)
>
> Gene Attributes: ENSEMBL Gene ID
>
> Filters:
> Select ID list limit, paste in Gene ID: ENSRNOG00000000065
>
> Select Count: shows 1 / 27,249 Genes
>
> Select Results ... blank, no results!!!!!!
>
> Searching for ENSRNOG00000000065 under ENSEMBL gives a gene with 1
> transcript that should come up under biomart?!
>
> Other genes work just fine (e.g. ENSRNOG00000005947). Other genes
> work only when selecting either Flank-coding region (Transcript) or
> Peptide or Coding Sequence but not all 3.
>
Hi Charles,
> What am I doing wrong?
nothing :-) but thanks for helping us to find a bug that has proved to
be very elusive.
The gene is actually present if you select any other (apart from
sequence) attributes
but somehow when you select sequence it does not come up.
Please bare with us while we are investigating further to get to the
bottom of it.
We'll get back to you when it is fixed
a.
>
> Thanks very much!
> Charles Danko
>
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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