On 7-Apr-08, at 6:01 AM, Isabelle Phan wrote:
Hi Arek
I tried that before and used 'Save page as...' and got this:
<html>
<head>
<title>BioMart - MartView</title>
<link rel="stylesheet" type="text/css" href="/biomart/mview/
martview.css" />
<script src="/biomart/mview/js/martview.js" type="text/javascript"
></script>
</head>
I can use copy/paste, but I think it would be better if Biomart sent
back a proper XML with mime-type set to application/xml (e.g. like http://beta.uniprot.org/uniprot/P12345.xml
)
hmm ... i meant try to follow the instructions on http://www.biomart.org/martservice.html
ei
compile your query using MView, click 'XML' button, save this to a
file (eg. myquery.xml) and then
run the following script
http://cvs.sanger.ac.uk/cgi-bin/viewcvs.cgi/*checkout*/biomart-perl/scripts/webExample.pl?content-type=text%2Fplain&rev=1.3&root=BioMart
(you can save it as myscript.pl)
on the commandline with myquery.xml as an argument.
ei
perl myscript.pl myquery.xml
this is supposed to give you tab delimited data exactly as in in the
output of MView result pannel
(you can of course optionally set it to html or fasta as an output
format)
or did i misunderstand the problem?
a.
I.
Arek Kasprzyk wrote:
Hi Isabelle,
perhaps you can consider using our webservices for your examples,
This does not need
anything to be installed, very easy to use and you get data faster?
We have a very simple example perl script which does not need any
modifications nor it needs any dependencies either
--
Isabelle Phan, D.Phil.
Swiss Institute of Bioinformatics Tel: (+41 22) 379 51 89
CMU - 1, rue Michel Servet Fax: (+41 22) 379 58 58
CH - 1211 Geneva 4 Switzerland email: [EMAIL PROTECTED]
