Dear All, I was trying to compare homologous A2 (19,373,520-22,605,415 bp) with C2 (41,712,768-44,366,288 bp) region using Mauve software. I met one problem and did not know how to solve it. Would you give me some advices.
Here is the log: OS name is: Windows 7 arch: amd64 Executing: win64\mauveAligner --output=<aa> --island-size=50 --island-output=<aa>.islands --backbone-size=50 --max-backbone-gap=50 --backbone-output=<aa>.backbone --id-matrix=<aa>.id_matrix --output-alignment=<aa>.alignment --output-guide-tree=<aa>.guide_tree C:\Program Files\Java\A2_C2 homologous region\chrA02_19373520_22605415.fasta C:\Program Files\Java\A2_C2 homologous region\chrA02_19373520_22605415.fasta.sslist C:\Program Files\Java\A2_C2 homologous region\chrC02_41712768_44366288.fasta C:\Program Files\Java\A2_C2 homologous region\chrC02_41712768_44366288.fasta.sslist Sequence file appears corrupt, proceeding with caution Sequence loaded successfully. C:\Program Files\Java\A2_C2 homologous region\chrA02_19373520_22605415.fasta 3231896 base pairs. Error creating sorted mer lis tSequence loaded successfully. C:\Program Files\Java\A2_C2 homologous region\chrC02_41712768_44366288.fasta 2653521 base pairs. Using weight 15 mers for initial seeds Sorted mer list loaded successfully Creating sorted mer list Exited with error code: -10 Unhandled gnException: Exception FileNotOpened thrown from Unknown() in ..\libMems\FileSML.cpp 125 Unable to open file for writing. Best Regards Lunwen Qian ------------------------------------------------------------------------------ "Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE Instantly run your Selenium tests across 300+ browser/OS combos. Get unparalleled scalability from the best Selenium testing platform available Simple to use. Nothing to install. Get started now for free." http://p.sf.net/sfu/SauceLabs _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
