Hello Hannah, On Sun, 2014-09-07 at 19:03 -0400, Hannah Fehlner-Peach wrote:
> Why are the regions of dissimilarity at different points in the two > corresponding LCBs? This seems to contradict the idea that the two > genomes are aligned to each other. Any help is appreciated! > It's not clear quite what you're asking about without seeing a screenshot. However, each genome frequently will have a collection of novel genes, and these novel genes can be in different positions in each genome. So I wonder if you are just noticing this effect in the similarity plot? Also, if you click on one of the genomes in an aligned region it will bring them into alignment. You might also notice that when you mouse-over one of the genomes, the cursor in the other genome shows the aligned region (if a homologous region was found, that is). Best, -Aaron -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ Want excitement? Manually upgrade your production database. When you want reliability, choose Perforce Perforce version control. Predictably reliable. http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
