Hi Swetha, it appears your system does not recognize mauveAligner as an
executable program. Can you please tell me exactly what operating system
and version (32 or 64-bit, kernel and glibc version) you are using?
Best,
-Aaron
On Thu, 2015-02-12 at 20:51 +1100, Swetha Gopal wrote:
> I downloaded Mauve 2.40 and while trying to perform the alignment for
> two mammalian bat genomes, encountered the following error. Since I am
> new to this whole thing, I request assistance in this regard.
>
> rying path /home/mku/Downloads/mauve_2.4.0/linux-x64/mauveAligner
> Running alignment.
> Executing
> /home/mku/Downloads/mauve_2.4.0/linux-x64/mauveAligner
> --output=/media/New Volume_/mauvee
> --island-size=50
> --island-output=/media/New Volume_/mauvee.islands
> --backbone-size=50
> --max-backbone-gap=50
> --backbone-output=/media/New Volume_/mauvee.backbone
> --id-matrix=/media/New Volume_/mauvee.id_matrix
> --output-alignment=/media/New Volume_/mauvee.alignment
> --output-guide-tree=/media/New Volume_/mauvee.guide_tree
> /media/SWETHA/My Project!/Sequences/M.brandtii/Mbrandtii rna.gbk
> /media/SWETHA/My Project!/Sequences/M.brandtii/Mbrandtii rna.gbk.sslist
> /media/SWETHA/My Project!/Sequences/P.alecto/Palecto rna.gbk
> /media/SWETHA/My Project!/Sequences/P.alecto/Palecto rna.gbk.sslist
> /home/mku/Downloads/mauve_2.4.0/linux-x64/mauveAligner: 1: Syntax
> error: "(" unexpected
> Exited with error code: 2
>
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--
Aaron E. Darling, Ph.D.
Associate Professor, ithree institute
University of Technology Sydney
Australia
http://darlinglab.org
twitter: @koadman
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Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
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