Hello,
I am new to MITK. I successfully installed them and now I am trying to
compile a very simple cxx file. I am also using the ITK libraries and since
I had the ITK4 already installed for other projects I am linking to the ITK
version installed by MITK.
This is .cxx file (the ITK parts are excluded):
//---------------------------------------
#include "mitkPicFileReader.h"
static const unsigned int ImageDimension = 3;
typedef mitk::PicFileReader PicReaderType;
int main( int argc, char ** argv ) {
PicReaderType::Pointer r = PicReaderType::New();
char* name;
r->SetFileName(name);//a_inputFileName());
r->Update();
return EXIT_SUCCESS;
}
//----------------------------------------
This is my CMakeList.txt:
#---------------------------------------------------------------------------------------------
# include itk
SET(ITK_DIR /home/strumia/Programs/MITK/MITK-superbuild/ITK-build/)
FIND_PACKAGE(ITK)
IF(ITK_FOUND)
MESSAGE ('ITK_USE_FILE' ${ITK_USE_FILE} )
INCLUDE(${ITK_USE_FILE})
ELSE(ITK_FOUND)
MESSAGE(FATAL_ERROR "ITK not found. Please set ITK_DIR.")
ENDIF(ITK_FOUND)
# include mitk
SET (MITK_DIR /home/strumia/Programs/MITK/MITK-superbuild/MITK-build)
FIND_PACKAGE(MITK REQUIRED)
IF(MITK_FOUND)
INCLUDE_DIRECTORIES(${MITK_INCLUDE_DIRS})
ELSE(MITK_FOUND)
MESSAGE(FATAL_ERROR "MITK not found. Please set MITK_DIR.")
ENDIF(MITK_FOUND)
LINK_DIRECTORIES(${MITK_LINK_DIRECTORIES})
ADD_EXECUTABLE(PicReadWrite PicReadWrite.cxx)
TARGET_LINK_LIBRARIES(PicReadWrite ${ITK_LIBRARIES} ${MITK_LIBRARIES})
#---------------------------------------------------------------------------------------------
I have two problems:
1. If I do cmake . with this CMakeList.txt it will not find the mitk .cpp
files; for example it gives me this error
In file included from
/home/strumia/Desktop/prova_link_MITK/PicReadWrite.cxx:3:0:
/home/strumia/Programs/MITK/MITK-2012.09.0-src/Modules/IpPicSupport/mitkPicFileReader.h:26:32:
fatal error: mitkLegacyAdaptors.h: No such file or directory
2. To solve this I add to include manually all the directories.
The CmakeList.txt becomes:
#---------------------------------------------------------------------------------------------
# include itk
SET(ITK_DIR /home/strumia/Programs/MITK/MITK-superbuild/ITK-build/)
FIND_PACKAGE(ITK)
IF(ITK_FOUND)
MESSAGE ('ITK_USE_FILE' ${ITK_USE_FILE} )
INCLUDE(${ITK_USE_FILE})
ELSE(ITK_FOUND)
MESSAGE(FATAL_ERROR "ITK not found. Please set ITK_DIR.")
ENDIF(ITK_FOUND)
# include mitk
SET (MITK_DIR /home/strumia/Programs/MITK/MITK-superbuild/MITK-build)
FIND_PACKAGE(MITK REQUIRED)
IF(MITK_FOUND)
INCLUDE_DIRECTORIES(${MITK_INCLUDE_DIRS})
ELSE(MITK_FOUND)
MESSAGE(FATAL_ERROR "MITK not found. Please set MITK_DIR.")
ENDIF(MITK_FOUND)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-2012.09.0-src/Modules/IpPicSupport)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-2012.09.0-src/Modules/LegacyAdaptors)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-superbuild/MITK-build/modulesConf)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-superbuild/MITK-build)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/IO)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/Common;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/DataManagement;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/Algorithms;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/Rendering;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/Interactions;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/Controllers;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Core/Code/Service)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-2012.09.0-src/Utilities/tinyxml;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Utilities/mbilog;/home/strumia/Programs/MITK/MITK-superbuild/MITK-build/Utilities/mbilog)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-2012.09.0-src/Utilities/ipPic;/home/strumia/Programs/MITK/MITK-2012.09.0-src/Utilities)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Code/Common;/home/strumia/Programs/MITK/MITK-superbuild/ITK-build;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/vcl)
INCLUDE_DIRECTORIES(/home/strumia/Programs/MITK/MITK-superbuild/ITK-build/Utilities/vxl/vcl;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/core/vnl;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/core;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/vcl/config.win32/vc60;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/vcl/config.win32;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/vcl/config.win32/vc70;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/vcl/config.stlport.win32-vc60;/home/strumia/Programs/MITK/MITK-superbuild/ITK-src/Utilities/vxl/core)
LINK_DIRECTORIES(${MITK_LINK_DIRECTORIES})
ADD_EXECUTABLE(PicReadWrite PicReadWrite.cxx)
TARGET_LINK_LIBRARIES(PicReadWrite ${ITK_LIBRARIES} ${MITK_LIBRARIES})
#---------------------------------------------------------------------------------------------
In this case is able to find the mitk .cpp files, but is giving linking
problems:
$make
Linking CXX executable PicReadWrite
CMakeFiles/PicReadWrite.dir/PicReadWrite.cxx.o: In function
`mitk::PicFileReader::New()':
PicReadWrite.cxx:(.text._ZN4mitk13PicFileReader3NewEv[mitk::PicFileReader::New()]+0x42):
undefined reference to `mitk::PicFileReader::PicFileReader()'
CMakeFiles/PicReadWrite.dir/PicReadWrite.cxx.o: In function
`itk::ObjectFactory<mitk::PicFileReader>::Create()':
PicReadWrite.cxx:(.text._ZN3itk13ObjectFactoryIN4mitk13PicFileReaderEE6CreateEv[itk::ObjectFactory<mitk::PicFileReader>::Create()]+0xe):
undefined reference to `typeinfo for mitk::PicFileReader'
PicReadWrite.cxx:(.text._ZN3itk13ObjectFactoryIN4mitk13PicFileReaderEE6CreateEv[itk::ObjectFactory<mitk::PicFileReader>::Create()]+0x47):
undefined reference to `typeinfo for mitk::PicFileReader'
collect2: ld returned 1 exit status
make[2]: *** [PicReadWrite] Error 1
make[1]: *** [CMakeFiles/PicReadWrite.dir/all] Error 2
make: *** [all] Error 2
Can you please help me?
Thanks,
--
-Madda-
--
-Madda-
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