Ah well, I tried to play a bit more with it, but the server is just missing
everything. After installing a recent cmake, compiling a custom gcc and a
few dependencies, it seems like the build won't start due to missing x11
libs and headers, then due to libwrap and tcdp.h and probably something
else later.
I think that these things are needed for vtk somewhere, even though I tried
to uncheck everything to the bare minimum (including qt of course). I
thought that vtk would be pulled with the superbuild or something, but it
did not go that far unfortunately with all those missing libs.
Would a command line only option rely on x11/internet stuff somewhere deep
or am I just missing too much base stuff and should try to hassle someone
to install more stuff on the server (unlikely, but I can try).
---
Well actually seems like the superbuild needs these thing to fetch them
from internet, and deactivating it instead complains on me missing
everything else of course. I think I'll try to build myself a static build
on a vm or a container or something instead now.
Hopefully it does work after that, more news if I get around it.
2017-12-12 7:20 GMT+01:00 Neher, Peter <[email protected]>:
> Hi Sam and Alex,
>
>
>
> I agree with Alex. I will add a build configuration for a commandline-only
> build to make this easier.
>
>
>
> Peter
>
>
>
>
>
> *Von:* Alex Valcourt Caron [mailto:[email protected]]
> *Gesendet:* Montag, 11. Dezember 2017 18:41
> *An:* Samuel St-Jean <[email protected]>; [email protected].
> net
> *Betreff:* Re: [mitk-users] Are there mitk build for centos 7?
>
>
>
> Hi Samuel,
>
>
>
> it is possible to install a standalone command line app of Fiberfox to do
> simulation on already created tractograms and dwi images, as the ones you
> can create with the design tools of Fiberfox. You will also require a
> specific parameter file in order to configure the simulations. You can
> parametrize it from the graphical interface of Fiberfox, then save it to
> use in the command line app.
>
>
>
> The installation of the app with the good dependencies, but without all
> the Qt dependencies is however a bit of a hurdle. I was able to accomplish
> it by doing this :
>
> - First enable the Cmake option MITK_BUILD_CONFIGURATION to mitkDiffusion
> (or DiffusionRelease or DiffusionWorkbench, etc ..) and start a configure
> step.
>
> - This will activate the required inner and outer ibraries for the linking
> step of the build to work. It however also enables all graphic
> applications, so in order to clear all Qt related build steps, you will
> need first to place back the option MITK_BUILD_CONFIGURATION to custom.
>
> - Then, deselect all of the Applications (MITK_BUILD_APP_* options) and
> deselect or empty all options related to Qt. I also suggest you not to
> build Shared Libs and Testing, targets which can depend on Qt even when
> building without it.
>
> - Configure, check that no Qt dependencies or path are present in the
> options, Generate and start building !
>
>
>
> Alex
> ------------------------------
>
> *De :* Samuel St-Jean <[email protected]>
> *Envoyé :* 11 décembre 2017 11:23:26
> *À :* [email protected]
> *Objet :* Re: [mitk-users] Are there mitk build for centos 7?
>
>
>
> Hello,
>
> I see that there are new builds for ubuntu 14.04 and 16.04, but
> unfortunately the glibc from cent 7 is a bit older. As I was trying to run
> some fiberfox simulations with motion and all, it made my computer swap by
> using over 19 GB of ram. Of course we have servers for heavy duty stuff,
> but they are too old for the released version of mitk diffusion.
>
> I tried building it some time ago from source, but getting qt running was
> just too much of a hurdle since stuff can't be easily installed on these
> servers. So for the actual questions :
>
> - Is there a build for older glibc somewhere which might not have reached
> the download page?
>
> - Say I just go without building the qt interface (which I tried while
> writing this, and it needs cmake 3.5, whereas I have 3.3.1, so too bad for
> now :/)
>
> Well anyway, what are the easy options for running on servers that people
> are using?
>
> Thanks,
>
> Samuel
>
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