Hi Gabi,

Just another caveat, if 22 is the total number of your sample, you should have 
maximum 22 variables, being a variable each coordinate, not each landmark (so 
it depends if your analysis is in 2D or 3D). 

All the best

Sole

Soledad De Esteban-Trivigno, PhD.

soledad.este...@icp.cat
Edifici Z -ICTA-ICP-  C/ de les Columnes s/n.

Campus de la Universitat Autònoma de Barcelona
E-08193 Cerdanyola del Vallès. Spain
www.icp.cat
 
 


-----Mensaje Original-----
Asunto: [MORPHMET] CVA and Discriminant Analysis in Morpho J
De: gnavas <gna...@mlml.calstate.edu>
A: morphmet@morphometrics.org
Fecha: 02/10/2015 22:31:32

Dear Morphometrics Wizards,

I have 2 questions for which I am hoping to get help on:


Question 1. CVA analysis: I have 6 sites. Within each site I have at least 22 
samples. When I ran a CVA comparison on these 6 sites in Morpho J. I was hoping 
to find a way to get an actual value for each of my samples that plotted. So, 
for instance, CV1 values for each specimen, and the same for CV2. In the 
results tab, I can only find data relevant to my landmarks and canonical 
variates coefficients relating to lanmarks.


I would love to figure out a way to export my CV1 and CV2 values for each 
specimen to then plot that against other parameters that may be effecting shape 
at those 2 or more canonical variate axes. Has anyone run into this problem, 
and found a solution?


Question 2. Discriminant Analysis: 
Again, 6 sites with 22 samples, but this time I was only able to compare 2 
sites at a time. Has anyone ever been able to run 1 site against all remaining 
sites? It would be great to get an idea of how my sites compare to all others, 
rather than to just one other at a time. I suspect I have to play with my 
classifier variables, but I am not sure how to go about that. At this point, I 
have made 1 classifier variable that allows me to distinguish the different 
sites.


If any of you have run into this or simply know how to do this, please let me 
know. I am also happy to give more detail on my study if that would help?


Thank you in advance!
Gabi


 
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