Hi Barry, Many thanks for the answers. They are very helpful. :-)
Regards, Guchun On 2 February 2012 13:53, Barry Haddow <[email protected]> wrote: > Hi Guchun > > On Thursday 02 Feb 2012 12:34:09 Guchun Zhang wrote: > > Hi Barry, > > > > It still crashes after the run-giza and run-giza-inverse step is > completed. > > At the moment, I simply deleted the "not found" line in .digest files and > > let the experiment continue. So far so good. > > Maybe it's the 'PATH=' statement that's causing the error messages then ... > I'm not sure. If you locate the run-giza and run-giza-inverse stanzas in > experiment.meta, and remove the 'error: not found' lines then it should > ignore these error messages. > > > > > I noticed in the log files (in steps directory) of my previous successful > > runs (on a single multi-core machine) that in some steps the STDERR files > > were not empty with step-being-successful kind of information and the > > STDOUT files sometimes contained little such information. Is this normal? > > > > Yes, the steps are quite variable in their debug messages. Some don't write > anything to stdout, but most write something to stderr. experiment.perl > just > checks the stderr for certain types of error messages. > > > About the location of the returned STDOUT from SGE, I normally either set > > -cwd in the script or use the option in the command. So I tried to add it > > to general-parallelizer.perl. But it made no effect. Do you in any chance > > know how to do it? > > The qsub options are probably set in experiment.perl, but I don't know the > details, > > cheers - Barry > > > > > Many thanks, > > > > Guchun > > > > On 1 February 2012 17:30, Guchun Zhang <[email protected]> wrote: > > > Hi Guchun > > > > > > So it looks as though this line in the script > > > > > > echo 'starting at '`date`' on '`hostname` > > > > > > is giving you a harmless 'not found' error (unless it's the path line, > as > > > Hieu > > > suggested). When ems parses the STDERR file it sees this, and thinks > giza > > > crashed. But from the output you posted, giza looks to have run > normally. > > > > > > Could you try removing the following line from experiment.perl? > > > > > > print STEP "echo 'starting at '`date`' on '`hostname`\n"; > > > > > > It's line 2580 in my copy, > > > > > > cheers - Barry > > > > > > On Wednesday 01 February 2012 15:21:53 you wrote: > > > > Hi Barry, > > > > > > > > Here they are. > > > > > > -- > > > The University of Edinburgh is a charitable body, registered in > > > Scotland, with registration number SC005336. > > > >
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