Hi Guchun

On Thursday 02 Feb 2012 12:34:09 Guchun Zhang wrote:
> Hi Barry,
> 
> It still crashes after the run-giza and run-giza-inverse step is completed.
> At the moment, I simply deleted the "not found" line in .digest files and
> let the experiment continue. So far so good.

Maybe it's the 'PATH=' statement that's causing the error messages then ... 
I'm not sure. If you locate the run-giza and run-giza-inverse stanzas in 
experiment.meta, and remove the  'error: not found' lines then it should 
ignore these error messages. 

> 
> I noticed in the log files (in steps directory) of my previous successful
> runs (on a single multi-core machine) that in some steps the STDERR files
> were not empty with step-being-successful kind of information and the
> STDOUT files sometimes contained little such information. Is this normal?
> 

Yes, the steps are quite variable in their debug messages. Some don't write 
anything to stdout, but most write something to stderr. experiment.perl just 
checks the stderr for certain types of error messages.

> About the location of the returned STDOUT from SGE, I normally either set
> -cwd in the script or use the option in the command. So I tried to add it
> to general-parallelizer.perl. But it made no effect. Do you in any chance
> know how to do it?

The qsub options are probably set in experiment.perl, but I don't know the 
details,

cheers - Barry

> 
> Many thanks,
> 
> Guchun
> 
> On 1 February 2012 17:30, Guchun Zhang <[email protected]> wrote:
> > Hi Guchun
> >
> > So it looks as though this line in the script
> >
> > echo 'starting at '`date`' on '`hostname`
> >
> > is giving you a harmless 'not found' error (unless it's the path line, as
> > Hieu
> > suggested). When ems parses the STDERR file it sees this, and thinks giza
> > crashed. But from the output you posted, giza looks to have run normally.
> >
> > Could you try removing the following line from experiment.perl?
> >
> > print STEP "echo 'starting at '`date`' on '`hostname`\n";
> >
> > It's line 2580 in my copy,
> >
> > cheers - Barry
> >
> > On Wednesday 01 February 2012 15:21:53 you wrote:
> > > Hi Barry,
> > >
> > > Here they are.
> >
> > --
> > The University of Edinburgh is a charitable body, registered in
> > Scotland, with registration number SC005336.
> 
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