Hi Barry, It still crashes after the run-giza and run-giza-inverse step is completed. At the moment, I simply deleted the "not found" line in .digest files and let the experiment continue. So far so good.
I noticed in the log files (in steps directory) of my previous successful runs (on a single multi-core machine) that in some steps the STDERR files were not empty with step-being-successful kind of information and the STDOUT files sometimes contained little such information. Is this normal? About the location of the returned STDOUT from SGE, I normally either set -cwd in the script or use the option in the command. So I tried to add it to general-parallelizer.perl. But it made no effect. Do you in any chance know how to do it? Many thanks, Guchun On 1 February 2012 17:30, Guchun Zhang <[email protected]> wrote: > Hi Guchun > > So it looks as though this line in the script > > echo 'starting at '`date`' on '`hostname` > > is giving you a harmless 'not found' error (unless it's the path line, as > Hieu > suggested). When ems parses the STDERR file it sees this, and thinks giza > crashed. But from the output you posted, giza looks to have run normally. > > Could you try removing the following line from experiment.perl? > > print STEP "echo 'starting at '`date`' on '`hostname`\n"; > > It's line 2580 in my copy, > > cheers - Barry > > On Wednesday 01 February 2012 15:21:53 you wrote: > > Hi Barry, > > > > Here they are. > > > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. >
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