Hi community, I've got the following compilation error message when tryying to compile mppiblast-1.4.0 on a Debian Sarge Linux. I performed all steps as recommended (including the patch part).
/ncbi/lib//libncbi.a(ncbifile.o): In function `Nlm_TmpNam':ncbifile.c:(.text+0x1a4): warning: the use of `tempnam' is dangerous, better use `mkstemp' /ncbi/lib//libncbitool.a(kappa.o): In function `RedoAlignmentCore':kappa.c:(.text+0x82): undefined reference to `Blast_FrequencyDataIsAvailable' :kappa.c:(.text+0x105): undefined reference to `Nlm_Int4MatrixNew' :kappa.c:(.text+0x236): undefined reference to `BlastCompo_HeapInitialize' :kappa.c:(.text+0x2e7): undefined reference to `BlastCompo_HeapPop' :kappa.c:(.text+0x336): undefined reference to `Blast_RedoAlignParamsFree' :kappa.c:(.text+0x363): undefined reference to `BlastCompo_HeapRelease' :kappa.c:(.text+0x3c7): undefined reference to `Nlm_Int4MatrixFree' :kappa.c:(.text+0x3f4): undefined reference to `Blast_CompositionWorkspaceFree' :kappa.c:(.text+0x40b): undefined reference to `Blast_ForbiddenRangesRelease' :kappa.c:(.text+0x448): undefined reference to `BlastCompo_EarlyTermination' :kappa.c:(.text+0x554): undefined reference to `Blast_RedoOneMatchSmithWaterman' :kappa.c:(.text+0x628): undefined reference to `BlastCompo_AlignmentsFree' :kappa.c:(.text+0x72a): undefined reference to `BlastCompo_HeapWouldInsert' :kappa.c:(.text+0x873): undefined reference to `BlastCompo_HeapInsert' :kappa.c:(.text+0x9c0): undefined reference to `Blast_RedoOneMatch' :kappa.c:(.text+0x9f1): undefined reference to `Blast_CompositionWorkspaceNew' :kappa.c:(.text+0xa0c): undefined reference to `Blast_CompositionWorkspaceInit' :kappa.c:(.text+0xafe): undefined reference to `Blast_ForbiddenRangesInitialize' :kappa.c:(.text+0xc02): undefined reference to `Nlm_Int4MatrixNew' I haven't found any awnswer for this in the archives. Thanks in advance, Elizeu ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Mpiblast-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mpiblast-users
