Follow-up Comment #2, bug #17914 (project mypaint):
The flashing effect under the cursor does not appear for the brush editor
window at all, nor does it happen if the brush/colour/layer selector is docked
when hiding/unhiding. So there is a fair guess that it's related to the layout
code, yes.
I use OpenBox with the commercial nvidia gfx driver over dual monitors.
I always use floating windows that are only open brief moments of time when I
need them (well, until this point at least, at the moment I'm using brush-keys
to select so I don't have to open the brush selector that often).
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