Hi Osvaldo,
Are you sure you have the 64-bit version of Java installed? (please try running
'java -d64 -version' in the Windows command line)
As far as I understand, the message means that MZmine is trying to allocate
more memory than what is possible on your OS.
That should not happen if you have 64-bit Windows and 64-bit Java. But honestly
I have no experience with Windows 8, so there might be some other reason why
this happens.
MZmine by default allocates half of the physical RAM, but you can change that
in the startMZmine script (see the HEAP_SIZE variable setting). Try setting the
HEAP_SIZE to 1000 for a start.
Best regards,
Tomas
On Oct 8, 2013, at 4:17 AM, Osvaldo Perez Jr <osvaldopere...@gmail.com> wrote:
> Hey Tomas,
>
> Thanks for the help. I was able to resolve the particular error message I was
> getting before with your suggestions, but I got another error message after I
> tried to open up MZmine. I have attached a screenshot of the error message.
> This is what it states:
>
> The size of the object heap + perm gen exceeds the maximum representable size
> Press any key to continue...
>
>
> Just in case you might need some information about my OS settings again, they
> are listed below:
>
> MZmine version 2.10
> OS: Windows 8 64-bit
> Java runtime: version 7 update 40
>
>
> Thanks in advance.
>
> Osvaldo
>
>
> On Sun, Sep 29, 2013 at 10:45 PM, Tomáš Pluskal <plus...@oist.jp> wrote:
> Hi Osvaldo,
>
> The problem probably is that your java installation was not added
> automatically to your PATH variable, so the java.exe program is not found.
> Not sure why this happens (reinstalling Java might fix it, possibly), but you
> can easily fix it manually.
>
> First find where your java.exe is located (should be something like
> C:\Program Files\Java\***\bin), then add that folder to your PATH.
> See the instructions here:
>
> http://www.java.com/en/download/help/path.xml
>
> Cheers,
>
> Tomas
>
>
> On Sep 28, 2013, at 2:39 AM, Osvaldo Perez Jr <osvaldopere...@gmail.com>
> wrote:
>
> > Hello,
> >
> > Here are the following versions of the information you would require to
> > asses my situation:
> >
> > MZmine version 2.10
> > OS: Windows 8 64-bit
> > Java runtime: version 7 update 40
> >
> > I downloaded MZmine 2.10 using the link provided by your website that led
> > me to the sourceforge site. I extracted the zip file and then went to open
> > the Windows batch file "startMZmine_Windows.bat". I attempted to either
> > extract all files as well as the Run options, but both result in the same
> > issue. A command prompt opens up that stated that: " 'java' is not
> > recognized as an internal or external command, operable program or batch
> > file. Press any key to continue..." i did not change any script settings. I
> > checked on the Java website to ensure that my version was up to date and it
> > said I had the latest version installed. I would appreciate any help with
> > this matter as soon as possible. Thanks in advance for your attention to
> > this matter.
> >
> > Best regards,
> >
> > Osvaldo
> > <Command Prompt Error
> > Message.png>------------------------------------------------------------------------------
> > October Webinars: Code for Performance
> > Free Intel webinars can help you accelerate application performance.
> > Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most
> > from
> > the latest Intel processors and coprocessors. See abstracts and register >
> > http://pubads.g.doubleclick.net/gampad/clk?id=60133471&iu=/4140/ostg.clktrk_______________________________________________
> > Mzmine-devel mailing list
> > Mzmine-devel@lists.sourceforge.net
> > https://lists.sourceforge.net/lists/listinfo/mzmine-devel
>
> ===============================================
> Tomas Pluskal
> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
> WWW: https://groups.oist.jp/g0
> TEL: +81-98-966-8684
> Fax: +81-98-966-2890
>
>
> <Command Prompt Error Message
> 2.png>------------------------------------------------------------------------------
> October Webinars: Code for Performance
> Free Intel webinars can help you accelerate application performance.
> Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from
> the latest Intel processors and coprocessors. See abstracts and register >
> http://pubads.g.doubleclick.net/gampad/clk?id=60134071&iu=/4140/ostg.clktrk_______________________________________________
> Mzmine-devel mailing list
> Mzmine-devel@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
------------------------------------------------------------------------------
October Webinars: Code for Performance
Free Intel webinars can help you accelerate application performance.
Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from
the latest Intel processors and coprocessors. See abstracts and register >
http://pubads.g.doubleclick.net/gampad/clk?id=60134071&iu=/4140/ostg.clktrk
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