Hi Tomas, I followed your instructions and this is what I got :
> .libPaths() [1] "C:/Users/Sonia/Documents/R/win-library/3.1" [2] "C:/Program Files/R/R-3.1.0/library" > packageDescription("xcms") Package: xcms Version: 1.40.0 Date: 2014-03-28 Title: LC/MS and GC/MS Data Analysis Author: Colin A. Smith <csm...@scripps.edu>, Ralf Tautenhahn <rtaut...@gmail.com>, Steffen Neumann <sneum...@ipb-halle.de>, Paul Benton <hpaul.bento...@imperial.ac.uk>, Christopher Conley <cjcon...@ucdavis.edu> Maintainer: Ralf Tautenhahn <rtaut...@gmail.com> Depends: R (>= 2.14.0), methods, mzR (>= 1.1.6), BiocGenerics, Biobase Suggests: faahKO, msdata, ncdf, multtest, rgl, MassSpecWavelet (>= 1.5.2), RANN, RUnit Enhances: Rgraphviz, Rmpi, XML Description: Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling. License: GPL (>= 2) + file LICENSE URL: http://metlin.scripps.edu/download/ and https://github.com/sneumann/xcms biocViews: MassSpectrometry, Metabolomics Packaged: 2014-04-12 08:41:02 UTC; biocbuild Built: R 3.1.0; i386-w64-mingw32; 2014-04-12 17:59:24 UTC; windows -- File: C:/Users/Sonia/Documents/R/win-library/3.1/xcms/Meta/package.rds > packageDescription("ptw") Package: ptw Type: Package Title: Parametric Time Warping Version: 1.0-7 Date: 2014-03-29 Author: Jan Gerretzen <j.gerret...@science.ru.nl>, Paul Eilers <p.eil...@erasmusmc.nl>, Hans Wouters, Tom Bloemberg <t.bloemb...@science.ru.nl>, Ron Wehrens <ron.wehr...@fmach.it> and The R Development Core Team Maintainer: Tom Bloemberg <t.bloemb...@science.ru.nl> Description: Parametric Time Warping aligns patterns, i.e. it aims to put corresponding features at the same locations. The algorithm searches for an optimal polynomial describing the warping. It is possible to align one sample to a reference, several samples to the same reference, or several samples to several references. One can choose between calculating individual warpings, or one global warping for a set of samples and one reference. Two optimization criteria are implemented: RMS (Root Mean Square error) and WCC (Weighted Cross Correlation). License: GPL (>= 2) Copyright: Copyright for the file src/approx.c is detailed in inst/COPYRIGHT LazyLoad: yes Repository: CRAN Date/Publication: 2014-03-30 00:17:02 Packaged: 2014-03-29 20:09:17 UTC; tombloem NeedsCompilation: yes Built: R 3.1.0; x86_64-w64-mingw32; 2014-04-10 20:09:03 UTC; windows -- File: C:/Users/Sonia/Documents/R/win-library/3.1/ptw/Meta/package.rds > packageDescription("rJava") Package: rJava Version: 0.9-6 Title: Low-level R to Java interface Author: Simon Urbanek <simon.urba...@r-project.org> Maintainer: Simon Urbanek <simon.urba...@r-project.org> Depends: R (>= 2.5.0), methods Description: Low-level interface to Java VM very much like .C/.Call and friends. Allows creation of objects, calling methods and accessing fields. License: GPL-2 URL: http://www.rforge.net/rJava/ SystemRequirements: java Packaged: 2013-12-23 15:17:13 UTC; svnuser NeedsCompilation: yes Repository: CRAN Date/Publication: 2013-12-24 00:16:48 Built: R 3.1.0; i386-w64-mingw32; 2014-04-10 19:24:24 UTC; windows -- File: C:/Users/Sonia/Documents/R/win-library/3.1/rJava/Meta/package.rds Best Regards -- View this message in context: http://mzmine-devel-developer-discussion.970458.n3.nabble.com/Problem-with-R-path-MZ-mine-start-tp4024372p4024381.html Sent from the Mzmine-devel -- Developer discussion mailing list archive at Nabble.com. ------------------------------------------------------------------------------ Is your legacy SCM system holding you back? Join Perforce May 7 to find out: • 3 signs your SCM is hindering your productivity • Requirements for releasing software faster • Expert tips and advice for migrating your SCM now http://p.sf.net/sfu/perforce _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel