G'day,

Sonja, configuration of the MZmine start-up script for R integration is tricky. It's documented in a couple of places:

http://sourceforge.net/p/mzmine/mailman/message/30700997/
https://bit.ly/MZmineManual#
id.vo2xw33k4sdd

Please work through these instructions carefully and double check that each setting corresponds to an actual directory for your R configuration.

It's also important to be aware of whether you have installed the 32- or 64-bit configuration. Your settings will differ in each case.

Please let us know how you get on.

Regards
Chris.

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