Hi all.
I'm trying to import raw files using the RawDataImportModule. I do however have
two problems:
1.
My files are being imported one at a time. If I do it through the raw data
import menu item then MZmine processes 4 at a time. How can I make the import
process multiple files at the same time?
2.
The raw files for import are not shown under "Tasks in progress...". How can I
add them to the task list?
Thanks for any help,
Thomas
//Import raw data files
int counter = 0;
if (importrawfiles) {
final RawDataImportModule RDI = new RawDataImportModule();
ParameterSet parameters = RDI.getParameterSetClass().newInstance();
List<Task> tasksList = new ArrayList<Task>();
SortedMap<Integer, MsRun> msrun =
mzTabFile.getMetadata().getMsRunMap();
File newFiles[] = new File[msrun.size()];
for(Entry<Integer, MsRun> entry : msrun.entrySet()) {
File testFile = new
File(entry.getValue().getLocation().getPath());
if(testFile.exists() && !testFile.isDirectory()) {
importedFiles++;
newFiles[counter] = new
File(entry.getValue().getLocation().getPath());
}
counter++;
}
parameters.getParameter(RawDataImportParameters.fileNames).setValue(newFiles);
RDI.runModule(parameters, tasksList);
for (Task t : tasksList) {
t.run();
}
}
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