Hello everyone, I have FSL 5.0.6 installed on Ubuntu 12.0.4LTS through the neurodebian repository. The GUI works just fine, but when I try to run commands through the terminal, I consistently get errors saying the command cannot be found. This is true for starting the FSL GUI through the command line, and every command for structural imaging. diffusion imaging, and brain extraction. The only exception is FSLView, which seems to work just fine from the command line.
I tried uninstalling and reinstalling the FSL core, which hasn't helped. I've dug around a bit through the google search results for this issue, but trying different command names hasn't helped either. I found a few archived email exchanges talking about configuring bash files, but I don't know enough about unix to know what this is. Can anyone help? Thanks, Dillon Dillon Niederhut Doctoral Candidate University of California, Berkeley Department of Anthropology 232 Kroeber Hall Berkeley, CA 94720
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