Having locked myself out of an account before by messing with login scripts, my advice is: after you change your login scripts (.profile, etc) DONT logout to test them. Instead, while still logged in, try to establish a second connection into the same account (e.g., via ssh). If that works, great you are all set. If you can't login, not a problem because you are still connected through the first connection and can revert things.
--Jeremy On Thu, Mar 13, 2014 at 12:25 PM, Williams, Travis <[email protected]>wrote: > Hi there, > > I don't think you wanted to do that with the PATH: directive. You want to > add a 'source' to your login scripts. > > So if there is a "/etc/fsl/5.0/fsl.sh" file (check that it is in fact > there) then you want to add the following line to the END of your .bashrc > file in your home directory: > > source /etc/fsl/5.0/fsl.sh > > Then save, log out and log back in, or just open and close the terminal or > type: hash -r and see if you can then see the fsl programs. > > You can also (if you have root access and intend for several users to use > the fsl programs) add the 'source /etc/fsl/5.0/fsl.sh' line to the end of > the /etc/bash.bashrc file. > > Hope that helps. > > ~Travis Williams > IS Manager 1 > Neurology Department, > Medical College of Wisconsin > ________________________________ > From: Neurodebian-users [neurodebian-users-bounces+trwilliams= > [email protected]] on behalf of Dillon Niederhut [ > [email protected]] > Sent: Thursday, March 13, 2014 10:58 AM > To: Kiyotaka Nemoto > Cc: [email protected] > Subject: Re: [Neurodebian-users] Command line issues with FSL > > Hi Kiyotaka, > > Thanks for your reply. As I said above, I'm not very familiar with Unix > systems. I tried adding ". /etc/fsl/5.0/fsl.sh" to the end of the file. I > logged out and logged back in, and still could not access command line > functions. > > I looked up how to edit .profile and add paths in the Ubuntu help pages< > http://askubuntu.com/questions/tagged/.profile>, and added the above path > for FSL to the end of the .profile file using something like PATH="PATH:$. > /etc/fsl/5.0/fsl.sh". I logged out of the system, but now I cannot log back > in. > > I'll try to edit out the new lines via the command prompt in recovery > mode. In the mean time, any help with the correct syntax would be greatly > appreciated. > > Thanks, > Dillon > > Dillon Niederhut > Doctoral Candidate > University of California, Berkeley > Department of Anthropology > 232 Kroeber Hall > Berkeley, CA 94720 > > > On Thu, Mar 13, 2014 at 12:58 AM, Kiyotaka Nemoto <[email protected] > <mailto:[email protected]>> wrote: > Dear Dillon, > > The solution is simple and written in the FSL website. > > http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/Linux > > > Quick start for Debian/Ubuntu users > > As of fsl 5.0 all you need do is add ". /etc/fsl/5.0/fsl.sh" to the end of > your .profile file. When you next login you should find the fsl programs > are available. > > > Hope this helps, > > Kiyotaka > > > > > > 2014-03-13 15:03 GMT+09:00 Dillon Niederhut <[email protected] > <mailto:[email protected]>>: > Hello everyone, > > I have FSL 5.0.6 installed on Ubuntu 12.0.4LTS through the neurodebian > repository. The GUI works just fine, but when I try to run commands through > the terminal, I consistently get errors saying the command cannot be found. > This is true for starting the FSL GUI through the command line, and every > command for structural imaging. diffusion imaging, and brain extraction. > The only exception is FSLView, which seems to work just fine from the > command line. > > I tried uninstalling and reinstalling the FSL core, which hasn't helped. > I've dug around a bit through the google search results for this issue, but > trying different command names hasn't helped either. I found a few archived > email exchanges talking about configuring bash files, but I don't know > enough about unix to know what this is. Can anyone help? > > Thanks, > Dillon > > Dillon Niederhut > Doctoral Candidate > University of California, Berkeley > Department of Anthropology > 232 Kroeber Hall > Berkeley, CA 94720 > > > _______________________________________________ > Neurodebian-users mailing list > [email protected]<mailto: > [email protected]> > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users > > > > -- > Kiyotaka Nemoto, M.D., Ph.D. > Assistant Professor > Department of Psychiatry > Division of Clinical Medicine, Faculty of Medicine > University of Tsukuba > 1-1-1Tennodai Tsukuba, Ibaraki 305-8575, Japan > E-mail: [email protected]<mailto:[email protected]> > > > _______________________________________________ > Neurodebian-users mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users >
_______________________________________________ Neurodebian-users mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
