Dear Dillon, The solution is simple and written in the FSL website.
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/Linux *Quick start for Debian/Ubuntu users* As of fsl 5.0 all you need do is add ". /etc/fsl/5.0/fsl.sh" to the end of your .profile file. When you next login you should find the fsl programs are available. Hope this helps, Kiyotaka 2014-03-13 15:03 GMT+09:00 Dillon Niederhut <[email protected]>: > Hello everyone, > > I have FSL 5.0.6 installed on Ubuntu 12.0.4LTS through the neurodebian > repository. The GUI works just fine, but when I try to run commands through > the terminal, I consistently get errors saying the command cannot be found. > This is true for starting the FSL GUI through the command line, and every > command for structural imaging. diffusion imaging, and brain extraction. > The only exception is FSLView, which seems to work just fine from the > command line. > > I tried uninstalling and reinstalling the FSL core, which hasn't helped. > I've dug around a bit through the google search results for this issue, but > trying different command names hasn't helped either. I found a few archived > email exchanges talking about configuring bash files, but I don't know > enough about unix to know what this is. Can anyone help? > > Thanks, > Dillon > > Dillon Niederhut > Doctoral Candidate > University of California, Berkeley > Department of Anthropology > 232 Kroeber Hall > Berkeley, CA 94720 > > > _______________________________________________ > Neurodebian-users mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users > -- Kiyotaka Nemoto, M.D., Ph.D. Assistant Professor Department of Psychiatry Division of Clinical Medicine, Faculty of Medicine University of Tsukuba 1-1-1Tennodai Tsukuba, Ibaraki 305-8575, Japan E-mail: [email protected]
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