bito-code-review[bot] commented on code in PR #43232:
URL: https://github.com/apache/superset/pull/43232#discussion_r4142912402


##########
superset/commands/chart/importers/v1/utils.py:
##########
@@ -287,3 +330,147 @@ def migrate_chart(config: dict[str, Any]) -> dict[str, 
Any]:
         output["query_context"] = json.dumps(query_context)
 
     return output
+
+
+def topological_sort_charts(
+    chart_configs: list[dict[str, Any]],
+) -> list[dict[str, Any]]:
+    """Sort charts so that annotation dependencies are imported first.
+
+    Handles multi-level dependencies (A→B→C) by iteratively resolving
+    charts whose in-batch dependencies are already satisfied.
+
+    TODO: Add runtime circular annotation detection in
+    QueryContextProcessor.get_viz_annotation_data to prevent infinite
+    recursion when rendering charts with circular line annotations.
+    """
+    if len(chart_configs) <= 1:
+        return chart_configs
+
+    def _annotation_dependencies(chart_config: dict[str, Any]) -> set[str]:
+        refs = {
+            ann["value"]
+            for ann in chart_config.get("params", {}).get("annotation_layers", 
[])
+            if ann.get("sourceType") in 
ANNOTATION_SOURCE_TYPES_WITH_CHART_REFERENCE
+            and isinstance(ann.get("value"), str)
+        }
+        if query_context_raw := chart_config.get("query_context"):
+            try:
+                query_context = json.loads(query_context_raw)
+            except (json.JSONDecodeError, TypeError):
+                query_context = {}
+
+            for query in query_context.get("queries", []):
+                refs.update(
+                    ann["value"]
+                    for ann in query.get("annotation_layers", [])
+                    if ann.get("sourceType")
+                    in ANNOTATION_SOURCE_TYPES_WITH_CHART_REFERENCE
+                    and isinstance(ann.get("value"), str)
+                )
+            refs.update(
+                ann["value"]
+                for ann in query_context.get("form_data", {}).get(
+                    "annotation_layers", []
+                )
+                if ann.get("sourceType") in 
ANNOTATION_SOURCE_TYPES_WITH_CHART_REFERENCE
+                and isinstance(ann.get("value"), str)
+            )
+        return refs
+
+    batch_uuids = {c["uuid"] for c in chart_configs}
+    sorted_refs: list[dict[str, Any]] = []
+    remaining = list(chart_configs)
+    resolved: set[str] = set()
+    while remaining:
+        next_remaining = []
+        for c in remaining:
+            unmet = _annotation_dependencies(c).intersection(batch_uuids - 
resolved)
+            if not unmet:
+                sorted_refs.append(c)
+                resolved.add(c["uuid"])
+            else:
+                next_remaining.append(c)
+        if len(next_remaining) == len(remaining):
+            logger.warning(
+                "Circular annotation dependency detected for charts: %s — "
+                "these charts may have unresolved annotation references after 
import.",
+                [c["uuid"] for c in next_remaining],
+            )
+            sorted_refs.extend(next_remaining)
+            break
+        remaining = next_remaining
+    return sorted_refs
+
+
+def _resolve_uuid_to_id(
+    uuid_value: str,
+    id_map: dict[str, int] | None,
+    model: type,
+) -> int | None:
+    """Resolve a UUID to a local integer ID using a map or DB fallback."""
+    if id_map and uuid_value in id_map:
+        return id_map[uuid_value]
+    try:
+        obj = db.session.query(model).filter_by(uuid=uuid_value).first()
+    except Exception:  # noqa: BLE001 — malformed UUID raises at bind time
+        return None
+    return obj.id if obj else None
+
+
+def _resolve_annotation_list(
+    annotations: list[dict[str, Any]],
+    annotation_layer_ids: dict[str, int] | None,
+    chart_ids: dict[str, int] | None,
+) -> None:
+    """Resolve UUID values to integer IDs in-place for an annotation list."""
+    resolved_annotations: list[dict[str, Any]] = []
+    for annotation in annotations:
+        if annotation.get("annotationType") == AnnotationType.FORMULA:
+            resolved_annotations.append(annotation)
+            continue
+        source_type = annotation.get("sourceType")
+        value = annotation.get("value")
+        if isinstance(value, int):
+            resolved_annotations.append(annotation)
+            continue
+        if not isinstance(value, str):
+            continue
+        if source_type == "NATIVE":
+            layer_id = _resolve_uuid_to_id(value, annotation_layer_ids, 
AnnotationLayer)
+            if layer_id is not None:
+                annotation["value"] = layer_id
+                resolved_annotations.append(annotation)
+        elif source_type in ANNOTATION_SOURCE_TYPES_WITH_CHART_REFERENCE:
+            ref_chart_id = _resolve_uuid_to_id(value, chart_ids, Slice)
+            if ref_chart_id is not None:
+                annotation["value"] = ref_chart_id
+                resolved_annotations.append(annotation)
+    annotations[:] = resolved_annotations
+
+
+def _resolve_query_context_annotations(
+    config: dict[str, Any],
+    annotation_layer_ids: dict[str, int] | None,
+    chart_ids: dict[str, int] | None,
+) -> None:
+    """Resolve annotation UUIDs to IDs in query_context (in-place)."""
+    if not config.get("query_context"):
+        return
+    try:
+        query_context = json.loads(config["query_context"])
+        for query in query_context.get("queries", []):
+            _resolve_annotation_list(
+                query.get("annotation_layers", []),
+                annotation_layer_ids,
+                chart_ids,
+            )
+        form_data = query_context.get("form_data", {})
+        _resolve_annotation_list(
+            form_data.get("annotation_layers", []),
+            annotation_layer_ids,
+            chart_ids,
+        )
+        config["query_context"] = json.dumps(query_context)
+    except json.JSONDecodeError:
+        pass

Review Comment:
   <!-- Bito Reply -->
   The fix correctly addresses the issue by ensuring that 
`_resolve_query_context_annotations` handles potential `TypeError` or 
`AttributeError` exceptions during JSON parsing or structure validation, 
preventing the import process from crashing. The implementation is appropriate 
as it ensures that malformed `query_context` data is safely skipped, 
maintaining the robustness of the annotation resolution process.
   
   **superset/commands/chart/importers/v1/utils.py**
   ```
   try:
           query_context = json.loads(config["query_context"])
           for query in query_context.get("queries", []):
               _resolve_annotation_list(
                   query.get("annotation_layers", []),
                   annotation_layer_ids,
                   chart_ids,
               )
   ```



##########
superset/commands/annotation_layer/importers/v1/utils.py:
##########
@@ -0,0 +1,71 @@
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+from typing import Any
+
+from marshmallow import fields
+
+from superset import db, security_manager
+from superset.commands.exceptions import ImportFailedError
+from superset.models.annotations import AnnotationLayer
+from superset.utils import json
+
+DATETIME_FIELD = fields.DateTime(allow_none=True)
+
+
+def import_annotation_layer(
+    config: dict[str, Any],
+    overwrite: bool = False,
+    ignore_permissions: bool = False,
+) -> AnnotationLayer:
+    """Upsert annotation layer config and return persisted layer.
+
+    If an existing layer is found and overwrite is False, return it unchanged.
+    """
+    can_write = ignore_permissions or security_manager.can_access(
+        "can_write", "Annotation"
+    )
+    if not can_write:
+        raise ImportFailedError(
+            "Annotation layer import requires can_write permission on 
Annotation"
+        )

Review Comment:
   <!-- Bito Reply -->
   The update correctly addresses the concern by ensuring the permission check 
is only enforced when a layer is being created or overwritten. This change 
maintains the existing behavior for dependency imports where 
`ignore_permissions` is not explicitly set to true, while allowing the import 
process to proceed when appropriate.



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