Hmmm... "make test" didn't do too well. I suspect there's some simple linking
problem, maybe a wrong library or something. The complete logfile is attached. It looks
to me like all the failures are from a single problem related to memory corruption.
make test >test.log 2>&1 &
$ uname -a
Linux radon 2.6.32-23-server #37-Ubuntu SMP Fri Jun 11 09:11:11 UTC 2010
x86_64 GNU/Linux
Craig
Running tests...
Test project /home/emi/openbabel-2-3-0-rc1/build-ubuntu10
Start 1: automorphism_Test
1/56 Test #1: automorphism_Test ................***Exception: SegFault 0.09
sec
Start 2: builder_Test
2/56 Test #2: builder_Test .....................***Exception: SegFault 7.36
sec
Start 3: canonconsistent_Test
3/56 Test #3: canonconsistent_Test .............***Exception: SegFault 0.79
sec
Start 4: canonstable_Test
4/56 Test #4: canonstable_Test .................***Exception: SegFault 24.36
sec
Start 5: cistrans_Test
5/56 Test #5: cistrans_Test ....................***Exception: SegFault 0.12
sec
Start 6: graphsym_Test
6/56 Test #6: graphsym_Test ....................***Exception: SegFault 0.39
sec
Start 7: implicitH_Test
7/56 Test #7: implicitH_Test ...................***Exception: SegFault 0.14
sec
Start 8: lssr_Test
8/56 Test #8: lssr_Test ........................***Exception: SegFault 8.72
sec
Start 9: isomorphism_Test
9/56 Test #9: isomorphism_Test .................***Exception: SegFault 0.13
sec
Start 10: rotor_Test
10/56 Test #10: rotor_Test .......................***Exception: SegFault 0.10
sec
Start 11: shuffle_Test
11/56 Test #11: shuffle_Test .....................***Exception: SegFault 4.70
sec
Start 12: smiles_Test
12/56 Test #12: smiles_Test ......................***Exception: SegFault 0.12
sec
Start 13: spectrophore_Test
13/56 Test #13: spectrophore_Test ................ Passed 1.64 sec
Start 14: squareplanar_Test
14/56 Test #14: squareplanar_Test ................ Passed 0.01 sec
Start 15: stereo_Test
15/56 Test #15: stereo_Test ......................***Exception: SegFault 0.51
sec
Start 16: stereoperception_Test
16/56 Test #16: stereoperception_Test ............***Exception: SegFault 0.20
sec
Start 17: tetrahedral_Test
17/56 Test #17: tetrahedral_Test ................. Passed 0.01 sec
Start 18: tetranonplanar_Test
18/56 Test #18: tetranonplanar_Test .............. Passed 0.01 sec
Start 19: tetraplanar_Test
19/56 Test #19: tetraplanar_Test ................. Passed 0.01 sec
Start 20: uniqueid_Test
20/56 Test #20: uniqueid_Test .................... Passed 0.01 sec
Start 21: inchiSamples_Test
21/56 Test #21: inchiSamples_Test ................***Exception: SegFault 0.30
sec
Start 22: inchiSamplesTechMan_Test
22/56 Test #22: inchiSamplesTechMan_Test .........***Exception: SegFault 0.17
sec
Start 23: aromatest_Test
23/56 Test #23: aromatest_Test ...................***Exception: SegFault 0.09
sec
Start 24: atom_Test
24/56 Test #24: atom_Test ........................ Passed 0.01 sec
Start 25: bond_Test
25/56 Test #25: bond_Test ........................ Passed 0.01 sec
Start 26: cansmi_Test
26/56 Test #26: cansmi_Test ......................***Exception: SegFault 2.11
sec
Start 27: charge-mmff94_Test
27/56 Test #27: charge-mmff94_Test ...............***Exception: SegFault 0.36
sec
Start 28: charge-gasteiger_Test
28/56 Test #28: charge-gasteiger_Test ............***Exception: SegFault 0.18
sec
Start 29: conversion_Test
29/56 Test #29: conversion_Test ..................***Exception: SegFault 0.10
sec
Start 30: datatest_Test
30/56 Test #30: datatest_Test .................... Passed 0.01 sec
Start 31: ffgaff_Test
31/56 Test #31: ffgaff_Test ......................***Exception: SegFault 1.63
sec
Start 32: ffghemical_Test
32/56 Test #32: ffghemical_Test ..................***Exception: SegFault 3.16
sec
Start 33: ffmmff94_Test
33/56 Test #33: ffmmff94_Test ....................***Exception: SegFault 1.95
sec
Start 34: ffuff_Test
34/56 Test #34: ffuff_Test .......................***Exception: SegFault 1.37
sec
Start 35: formalcharge_Test
35/56 Test #35: formalcharge_Test ................***Exception: SegFault 0.26
sec
Start 36: format_Test
36/56 Test #36: format_Test ......................***Exception: SegFault 0.07
sec
Start 37: formula_Test
37/56 Test #37: formula_Test .....................***Exception: SegFault 0.38
sec
Start 38: internalcoord_Test
38/56 Test #38: internalcoord_Test ............... Passed 0.01 sec
Start 39: invalidsmarts_Test
39/56 Test #39: invalidsmarts_Test ............... Passed 0.04 sec
Start 40: invalidsmiles_Test
40/56 Test #40: invalidsmiles_Test ...............***Exception: SegFault 0.07
sec
Start 41: iterators_Test
41/56 Test #41: iterators_Test ...................***Exception: SegFault 0.24
sec
Start 42: logp_psa_Test
42/56 Test #42: logp_psa_Test ....................***Exception: SegFault 0.09
sec
Start 43: math_Test
43/56 Test #43: math_Test ........................ Passed 0.13 sec
Start 44: mol_Test
44/56 Test #44: mol_Test .........................***Exception: SegFault 0.09
sec
Start 45: phmodel_Test
45/56 Test #45: phmodel_Test .....................***Exception: SegFault 0.11
sec
Start 46: residue_Test
46/56 Test #46: residue_Test .....................***Exception: SegFault 0.08
sec
Start 47: ringtest_Test
47/56 Test #47: ringtest_Test ....................***Exception: SegFault 0.24
sec
Start 48: smartstest_Test
48/56 Test #48: smartstest_Test ..................***Exception: SegFault 0.41
sec
Start 49: smartsparse_Test
49/56 Test #49: smartsparse_Test ................. Passed 0.04 sec
Start 50: smilesmatch_Test
50/56 Test #50: smilesmatch_Test .................***Exception: SegFault 1.44
sec
Start 51: unitcell_Test
51/56 Test #51: unitcell_Test .................... Passed 0.01 sec
Start 52: pytest_babel
52/56 Test #52: pytest_babel ..................... Passed 0.48 sec
Start 53: pytest_sym
53/56 Test #53: pytest_sym ....................... Passed 7.07 sec
Start 54: pytest_fastsearch
54/56 Test #54: pytest_fastsearch ................ Passed 0.38 sec
Start 55: pytest_unique
55/56 Test #55: pytest_unique .................... Passed 0.87 sec
Start 56: pytest_kekule
56/56 Test #56: pytest_kekule .................... Passed 1.71 sec
34% tests passed, 37 tests failed out of 56
Total Test time (real) = 75.38 sec
The following tests FAILED:
1 - automorphism_Test (SEGFAULT)
2 - builder_Test (SEGFAULT)
3 - canonconsistent_Test (SEGFAULT)
4 - canonstable_Test (SEGFAULT)
5 - cistrans_Test (SEGFAULT)
6 - graphsym_Test (SEGFAULT)
7 - implicitH_Test (SEGFAULT)
8 - lssr_Test (SEGFAULT)
9 - isomorphism_Test (SEGFAULT)
10 - rotor_Test (SEGFAULT)
11 - shuffle_Test (SEGFAULT)
12 - smiles_Test (SEGFAULT)
15 - stereo_Test (SEGFAULT)
16 - stereoperception_Test (SEGFAULT)
21 - inchiSamples_Test (SEGFAULT)
22 - inchiSamplesTechMan_Test (SEGFAULT)
23 - aromatest_Test (SEGFAULT)
26 - cansmi_Test (SEGFAULT)
27 - charge-mmff94_Test (SEGFAULT)
28 - charge-gasteiger_Test (SEGFAULT)
29 - conversion_Test (SEGFAULT)
31 - ffgaff_Test (SEGFAULT)
32 - ffghemical_Test (SEGFAULT)
33 - ffmmff94_Test (SEGFAULT)
34 - ffuff_Test (SEGFAULT)
35 - formalcharge_Test (SEGFAULT)
36 - format_Test (SEGFAULT)
37 - formula_Test (SEGFAULT)
40 - invalidsmiles_Test (SEGFAULT)
41 - iterators_Test (SEGFAULT)
42 - logp_psa_Test (SEGFAULT)
44 - mol_Test (SEGFAULT)
45 - phmodel_Test (SEGFAULT)
46 - residue_Test (SEGFAULT)
47 - ringtest_Test (SEGFAULT)
48 - smartstest_Test (SEGFAULT)
50 - smilesmatch_Test (SEGFAULT)
Errors while running CTest
make: *** [test] Error 8
------------------------------------------------------------------------------
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