HI Johannes, This is Hedra, I work on importing different bioinformatics data set's into Atomese format for the Gene Annotation Service we are doing at MOZI-AI. Most of the datasets I used to work with were in a CSV format and I was not dealing with any of the ontology processing tools.
You can find the datasets Atomese version here https://mozi.ai/datasets/ and the scripts to import them here https://github.com/opencog/agi-bio/tree/master/knowledge-import/SNET If you are interested in what we are doing at mozi, you can also check our github page here https://github.com/moZI-AI/ Beside the datasets above, I am working to import the go-plus.owl (which contains the main GO ontology plus axioms connecting to selected external ontologies) and I have been exploring tools to process RDF or OWL/XML data, I found pronto to be very helpful thank you for the post. If you don't mind, I will update you once am done working with it or have a question as I believe your feedback really helps with the ontology related works we will do. Thank you so much! Best Regards! Hedra On Monday, January 14, 2019 at 8:49:02 AM UTC-5, Johannes Castner wrote: > > Dear opencog friends and fellow hackers and people who are interested in > ontologies etc, here is a python script I've been working on that parses > the ENVO.obo ontology and prints a version of it to Scheme. > I could definitely use some help with improvements and I'll be vigorously > working on it myself. Here is the first draft: > https://github.com/jac2130/obo_to_Atom_Space/blob/master/ENVO_scm.py > > Basically the idea is to generalize it and build new parsers and scheme > writers that parse other ontologies but that follow the same basic logic. > > Hope that it is useful! > > johannes > -- You received this message because you are subscribed to the Google Groups "opencog" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/opencog. To view this discussion on the web visit https://groups.google.com/d/msgid/opencog/5111965b-1b98-464a-ad60-db384d5e6eba%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
