Hi Michael, I'd be super happy to discuss and to help out anywhere I can! I'm trying to build on an effort called `pronto' that allows merging of owl and obo ontologies and that helps with a lot of the parsing, pre-processing and most importantly, intelligent information bundling, in preparation of inserting it into the AtomSpace in the most meaning preserving and enhancing ways possible. I'm currently trying to add a feature that would allow for intelligent JSON-LD handling; so that ConceptNet and SciGraph can be handled by the same tools that allow you to also handle obo and owl ontologies (there is a one-to-one mapping between all of those formats): https://scigraph.springernature.com/explorer/api/ I'd love to know if such tools could help you!
Johannes On Thursday, February 21, 2019 at 3:35:56 AM UTC, Michael Duncan wrote: > > hi johannes, i helped write some of the (now mostly outdated) code in the > agi-bio repo. i've been following this conversation but have been too busy > working on a gene annotation service that includes a new version of the > atomspace representation and import scripts for the gene ontology that we > are contributing to the snet beta release to chime in. once the snet > service version is finalized we will update the agi-bio repo with the new > code so you can access it there or on the snet repo for the service. > unfortunately i haven't had a chance to look over what you've done so far > to compare but hopefully you'll be willing to discuss it with us in the > singularity net bio community forum we will launch with the beta. > > also, unless i missed it, nil forgot to mention that he wrote an import > script for sumo > <https://github.com/opencog/external-tools/tree/master/SUMO_importer>, > which i'm assuming is the Suggested Upper Merged Ontology > <http://www.adampease.org/OP/> (there isn't a direct reference in the > readme). > > thanks for sharing! > > > On Monday, January 14, 2019 at 8:49:02 AM UTC-5, Johannes Castner wrote: >> >> Dear opencog friends and fellow hackers and people who are interested in >> ontologies etc, here is a python script I've been working on that parses >> the ENVO.obo ontology and prints a version of it to Scheme. >> I could definitely use some help with improvements and I'll be vigorously >> working on it myself. Here is the first draft: >> https://github.com/jac2130/obo_to_Atom_Space/blob/master/ENVO_scm.py >> <https://www.google.com/url?q=https%3A%2F%2Fgithub.com%2Fjac2130%2Fobo_to_Atom_Space%2Fblob%2Fmaster%2FENVO_scm.py&sa=D&sntz=1&usg=AFQjCNHzu-koZ1TjyItKH4bY7WJNmNRMsg> >> >> Basically the idea is to generalize it and build new parsers and scheme >> writers that parse other ontologies but that follow the same basic logic. >> >> Hope that it is useful! >> >> johannes >> > -- You received this message because you are subscribed to the Google Groups "opencog" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/opencog. To view this discussion on the web visit https://groups.google.com/d/msgid/opencog/ecf1a078-5467-435e-94d3-296cc9488301%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
